Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0974 ATGCGACGTCCCGAGCACTTCGAGTGTGGAAGGGGGGTGTCACCTGCAAAGACACTCCGACGCTCAATGCCTGCATCCCCTGAGTTATTGGACCAAATTTTACCTGCCATAGGCGAAACTGCAAGAAGGATTCTAAGCCGTGAAGGGTGTGACTCCAACACGCTGGAGATTGTTGTGAACCTTCACGTTGTTACCAGGCGCAACATTGTTCAAGATTCTGATATCTATAATGATGATCTCTGTGAAAACGTTCCTGAACTAGCACAACTCGTGAATCTGTTAGAGAGATCCAAAATTGATGAGCAAGATGATGACGCTGAATGCGCTATTTGCTTGGAGAAGTTTGGCCATGGTAACGAAGATTCAAGTGTAGAAGTTGTTCGCATAAATTGCTCGCATGTTTTTCATGATCGTTGCATGCTCCGCTGGCTCCGATGCTGTGCCGACCATCAGTCGCCGTATTCTTGCCCATTGTGCCGCTGCCTCATATCTCCAACTTCACACGGTGACGATGAATAG 519 0.4778 MRRPEHFECGRGVSPAKTLRRSMPASPELLDQILPAIGETARRILSREGCDSNTLEIVVNLHVVTRRNIVQDSDIYNDDLCENVPELAQLVNLLERSKIDEQDDDAECAICLEKFGHGNEDSSVEVVRINCSHVFHDRCMLRWLRCCADHQSPYSCPLCRCLISPTSHGDDE* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0974 172 Pfam Ring finger domain 107 160 IPR001841 -
Ahy17g0974 172 SUPERFAMILY RING/U-box 100 165 - -
Ahy17g0974 172 ProSiteProfiles Zinc finger RING-type profile. 108 160 IPR001841 -
Ahy17g0974 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 86 166 - -
Ahy17g0974 172 CDD RING-H2 108 160 - -
Ahy17g0974 172 SMART ring_2 108 159 IPR001841 -
Ahy17g0974 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 167 IPR013083 -
Ahy17g0974 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 86 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0974 Ahy-Chr17 12131004 12134526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0974 93 160 C3H Transcription Factor Family AT4G12190 37.500 4.04e-08 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0974 - - ahf:112762801 362.459