Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0973 ATGGGTTCTTGTGCCATGACTGAGGGTTTGAAGGAGAAGGCTGAGCAGAATTACGAACGCATCTTTTCGGCCAATCTTGACTTGAAAAGGGAGGTGGAGCAGCTTCAGGAGGGTTACCAGGACTTGGAGGACTCCATTGTCGAGGACCTCAACAGAGAAGACACAATCTTATTGCATGAAATCTTCTCTTCAGTGCCTGCATCCCCTGAGTTATTGGACCAAATTTTACCTGCCATAGGCGAAACTGCAAGAAGGATTCTAAGCCGTGAAGGGTGTGACTCCAACACGCTGGAGATTGTTGTGAACCTTCACGTTGTTACCAGGCGCAACATTGTTCAAGATTCTGATATCTATAATGATGATCTCTGTGAAAACGTTCCTGAACTAGCACAACTCGTGAATCTGTTAGAGAGATCCAAAATTGATGAGCAAGATGATGACGCTGAATGCGCTATTTGCTTGGAGAAGTTTGGCCATGGTAACGAAGATTCAAGTGTAGAAGTTGTTCGCATAAATTGCTCGCATGTTTTTCATGATCGTTGCATGCTCCGCTGGCTCCGATGCTGTGCCGACCATCAGTCGCCGTATTCTTGCCCATTGTGCCGCTGCCTCATATCTCCAACTTCACACGGTGACGATGAATAG 645 0.4651 MGSCAMTEGLKEKAEQNYERIFSANLDLKREVEQLQEGYQDLEDSIVEDLNREDTILLHEIFSSVPASPELLDQILPAIGETARRILSREGCDSNTLEIVVNLHVVTRRNIVQDSDIYNDDLCENVPELAQLVNLLERSKIDEQDDDAECAICLEKFGHGNEDSSVEVVRINCSHVFHDRCMLRWLRCCADHQSPYSCPLCRCLISPTSHGDDE* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0973 214 Coils Coil 11 52 - -
Ahy17g0973 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 209 IPR013083 -
Ahy17g0973 214 PANTHER RING ZINC FINGER PROTEIN-RELATED 109 208 - -
Ahy17g0973 214 Pfam Ring finger domain 149 202 IPR001841 -
Ahy17g0973 214 SUPERFAMILY RING/U-box 144 207 - -
Ahy17g0973 214 SMART ring_2 150 201 IPR001841 -
Ahy17g0973 214 PANTHER RING ZINC FINGER PROTEIN-RELATED 109 208 - -
Ahy17g0973 214 ProSiteProfiles Zinc finger RING-type profile. 150 202 IPR001841 -
Ahy17g0973 214 CDD RING-H2 150 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0973 Ahy-Chr17 12115827 12125990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0973 135 202 C3H Transcription Factor Family AT4G12190 37.500 2.66e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0973 - - ahf:112762800 440.269