Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0971 ATGATTGACCTCAACAGAGAAGACACAATCTTATTGCATGAAATCTTCTCTTCAGTGCCTGCATCCCCTGAGTTATTGGACCAAATTTTACCTGCCATAGGCGAAACTGCAAGAAGGATTCTAAGCCGTGAAGGGTGTGACTCCAACACGCTGGAGATTGTTGTGAACCTTCACGTTGTTACCAGGCGCAACATTGTTCAAGATTCTGATATCTATAATGATGATCTCTGTGAAAACGTTCCTGAACTAGCACAACTCGTGAATCTGTTAGAGAGATCCAAAATTGATGAGCAAGATGATGACGCTGAATGCGCTATTTGCTTGGAGAAGTTTGGCCATGGTAACGAAGATTCAAGTGTAGAAGTTGTTCGCATAAATTGCTCGCATGTTTTTCATGATCGTTGCATGCTCCGCTGGCTCCGATGCTGTGCCGACCATCAGTCGCCGTATTCTTGCCCATTGTGCCGCTGCCTCATATCTCCAACTTCACACGGTGACGATGAATAG 507 0.4497 MIDLNREDTILLHEIFSSVPASPELLDQILPAIGETARRILSREGCDSNTLEIVVNLHVVTRRNIVQDSDIYNDDLCENVPELAQLVNLLERSKIDEQDDDAECAICLEKFGHGNEDSSVEVVRINCSHVFHDRCMLRWLRCCADHQSPYSCPLCRCLISPTSHGDDE* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0971 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 88 162 - -
Ahy17g0971 168 SMART ring_2 104 155 IPR001841 -
Ahy17g0971 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 163 IPR013083 -
Ahy17g0971 168 SUPERFAMILY RING/U-box 96 161 - -
Ahy17g0971 168 CDD RING-H2 104 156 - -
Ahy17g0971 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 88 162 - -
Ahy17g0971 168 ProSiteProfiles Zinc finger RING-type profile. 104 156 IPR001841 -
Ahy17g0971 168 Pfam Ring finger domain 103 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0971 Ahy-Chr17 12046180 12049359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0971 89 156 C3H Transcription Factor Family AT4G12190 37.500 2.22e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0971 - - ahf:112762800 347.051