Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0931 ATGGAATTCACCTCTTTTTCATGGGCAATCAATTCCATTGAAGATCCAAGCATACCACAAGACTTGTGTTTCGACGATTGCTTCTCCATCATCTTCAGTTTCACCAAAGAATTGATCCAAATTACTCAACCCACAAGTCCAACCTCTGAGGTTGACTTTTCTTCTACAACTGTGGCCAATGAAGCGTTCTTGGTTCCTTCAGATATCCTGTGTAATTGTACTCCGTTCACAGACCTCAATGGAGAAAACACCGCATTCTTGCATGAAGTCTTCTCTTCATTGCCTATATCCCATCAGATATTGGACCAAATTTTACCAGCAATGGGCGAAACCGCAAGAACGATTCGAAGCCATGAAGGGTGTGACTCCACCATGCTGGAGATTGTTGTGAACCTTTATGTTACTACGCACATTGTTGTCGAAGATTCTGATTTCTATAACGATGATCTTCGTCAAAACGTTCCTGAACTGGCACAACTCGTGAATCTGTTGGAGAGAACCAGAATTGATAAGCAAGATGATGATGCCGAAGAACAATGCGCCATTTGCTTGGAAGAGTTTGATTATAGTATTGAAGATTCAAGTGTAGAAGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAACGCTGCATATTCCGTTGGCTCCGGCGTTGTGCCGACCGGCAATCGCCCTATTCTTGCCCGTTATGCCGCTGTAGCATATTTCCAAACTCACAGATACATGACGAATAG 735 0.4313 MEFTSFSWAINSIEDPSIPQDLCFDDCFSIIFSFTKELIQITQPTSPTSEVDFSSTTVANEAFLVPSDILCNCTPFTDLNGENTAFLHEVFSSLPISHQILDQILPAMGETARTIRSHEGCDSTMLEIVVNLYVTTHIVVEDSDFYNDDLRQNVPELAQLVNLLERTRIDKQDDDAEEQCAICLEEFDYSIEDSSVEVVRTNCSHVFHERCIFRWLRRCADRQSPYSCPLCRCSIFPNSQIHDE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0931 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 237 IPR013083 -
Ahy17g0931 244 SMART ring_2 180 231 IPR001841 -
Ahy17g0931 244 ProSiteProfiles Zinc finger RING-type profile. 180 232 IPR001841 -
Ahy17g0931 244 SUPERFAMILY RING/U-box 171 238 - -
Ahy17g0931 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 148 233 - -
Ahy17g0931 244 Pfam Ring finger domain 179 232 IPR001841 -
Ahy17g0931 244 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 148 233 - -
Ahy17g0931 244 Coils Coil 147 167 - -
Ahy17g0931 244 CDD RING-H2 180 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0931 Ahy-Chr17 11313781 11314515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0931 170 236 C3H Transcription Factor Family AT5G47610 41.791 1.00e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0931 - - adu:110273516 451.44