Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0891 ATGGATTGTGATGCTCTTACTCTATCCACTATGACTATCTCTTCACCAGGATTGTTACCAACTGAGACATTGTTAGATTCTTTGGTTCACATATCCAATGAAGTTGTCTCAATAGAGAAGCTTCCATTTGTGCAAATGAGGAATGTCTCATCCATGATAAGGAGGATCAAGCTTCTCTCTTCATTGTTTGAAGAGATTCAAGAGGCAGAAACACCACTCCCTCCTTCTTCAACTCTTTGCTTCACTGAGCTTTTATCAGTGATCACAAGGGGTAAGGTTTTGATCCAAGAAATCAAAGATGCAAGCACCCTTTGGGGCCTGATTCAGTTAGAATTCATCTCAAACCAATTCTATGTTCTTGTTAAAGAGATGGGAAGAGCCCTTGATATCTTGCCTCTTAGATTGCTCAACATAACTGCAGATATAAGGGAGCAAGTGGATCTTCTTCACAAACAAGCGAAGCGAGCCGAGTTAACCATTGATCCTAGAGAGCTCCAAAGAAGAGAAATGCTTCTAGAAGTAATGGCCAACAACATGATGCAAAACAAGAAGAACAAGGGCTATATGGATTTTGGTAAAATGGAAGAACTGTTAAGCAGCATTGGTTTGAGAACTATATCAGATTATGATATAGAAATTTCAAAGTTGGAGATTGAAGCTCAGAATCAAGCAGGAACAGGAGGACTAGTGGTTGTGTCAAACATAAACAACCTCATATCTCTTGTTTCTTATTCCAAATCAATGATTTTCAGAGATGGAGAAAATGAAGAAAGTAAGAAAGAATCTTGTTCATATTTGTACAACAAAGTCAATGATAGCTCTTCATCTTCTCAATCCATGTCAATTCCTGACGAATTTCGCTGCCCAATTTCGCTTGACTTAATGAGAGATCCTGTGATTGTTTCATCCGGCCACACATATGATCGAAATTCGATTGCGCAGTGGATAAACTCTGGCCACCATACTTGCCCCAAAAGTGGACAGAGGCTAATCCACACTGCTCTGATACCAAATTATGCACTGAAAAGTCTTGTTCAGCAATGGTGCTATGACAACAATGTTCCATTGAATGAGCCTAATTCTTCTGTTTCCGAGGAAAAGAGCAATAAGAAGAACTCAAATGACGGCGCTATTGATCACATCTCTGCCAACAAAGCGGCTGCAGATGCTGTGAAAATGACAGCAGAGTTTCTGGTTGGAAAATTGGCAACAGGCTCAGCTGACACACAAAGACAAGCTGCCTATGAGCTTCGTTTACTCGCGAAAACCGGCATGGACAACCGGCGAATCATAGCTGAGGTAGGTGCTATTCCTTTTCTGGTAACACTACTTGGATCACATGATCCAAGAATCCAGGAACATGCAGTGACTGCCATGTTCAACCTATCAATCTATGATAACAACAAGGTTCTGCTCATGTCGGCCGGCGCAGTGGACAAAATAGTCCAAGTTCTAGAACAAGGGAGAACAATGGAAGCCAGAGAGAATGCTGCAGCAACAATATTCAGCTTGAGTATGTTAGATGAATGCAAGGTTCAAATCGGAGCGCGGCCGAGGGCGGTTCCTGCATTAGTCCTACTCTTGAAAGAAGGCACACCAGTTGGGAAAAGAGATGCAGCAACTGCACTATTCAACCTTGCAGTGTACAATCCAAACAAATCAATAATTGTGAGTTCTGGTGCAGTTGATGTGCTTATTGAATTGCTAATGGATGATAAAGCTAGCATTACTGATGATGCATTATCAGTTCTTGCTTTGTTACTTGGATGCTCACAAGGACTAAAAGAAATAAGGAATAGTAGAGAGTTGGTGCCACTTCTCATTGATCTTCTAAGATTTGGATCAGTCAAAGGGAAGGAAAATTCTATAACACTTCTTCTAGGATTGTGCAAGGAAGAGACCGAGGTGGTTGCGCGGCGGTTGCTGGCGAATCCAAGGAGCGTGCCGTCGCTTCAAAGCTTGGCTGCTCATGGCTCATTGAGAGCTAGAAGGAAGGCTGATGCATTGTTAAGGTTGCTCAATAGATGCTGCTCTCAGCCTCATCATTCTCTTTGA 2055 0.4204 MDCDALTLSTMTISSPGLLPTETLLDSLVHISNEVVSIEKLPFVQMRNVSSMIRRIKLLSSLFEEIQEAETPLPPSSTLCFTELLSVITRGKVLIQEIKDASTLWGLIQLEFISNQFYVLVKEMGRALDILPLRLLNITADIREQVDLLHKQAKRAELTIDPRELQRREMLLEVMANNMMQNKKNKGYMDFGKMEELLSSIGLRTISDYDIEISKLEIEAQNQAGTGGLVVVSNINNLISLVSYSKSMIFRDGENEESKKESCSYLYNKVNDSSSSSQSMSIPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPLNEPNSSVSEEKSNKKNSNDGAIDHISANKAAADAVKMTAEFLVGKLATGSADTQRQAAYELRLLAKTGMDNRRIIAEVGAIPFLVTLLGSHDPRIQEHAVTAMFNLSIYDNNKVLLMSAGAVDKIVQVLEQGRTMEARENAAATIFSLSMLDECKVQIGARPRAVPALVLLLKEGTPVGKRDAATALFNLAVYNPNKSIIVSSGAVDVLIELLMDDKASITDDALSVLALLLGCSQGLKEIRNSRELVPLLIDLLRFGSVKGKENSITLLLGLCKEETEVVARRLLANPRSVPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0891 684 SMART arm_5 590 631 IPR000225 GO:0005515
Ahy17g0891 684 SMART arm_5 510 548 IPR000225 GO:0005515
Ahy17g0891 684 SMART arm_5 465 506 IPR000225 GO:0005515
Ahy17g0891 684 SMART arm_5 424 464 IPR000225 GO:0005515
Ahy17g0891 684 SMART arm_5 549 589 IPR000225 GO:0005515
Ahy17g0891 684 Gene3D - 492 676 IPR011989 -
Ahy17g0891 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Ahy17g0891 684 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 21 681 - -
Ahy17g0891 684 CDD RING-Ubox_PUB 286 328 IPR045210 -
Ahy17g0891 684 Pfam Armadillo/beta-catenin-like repeat 550 585 IPR000225 GO:0005515
Ahy17g0891 684 Pfam Armadillo/beta-catenin-like repeat 426 463 IPR000225 GO:0005515
Ahy17g0891 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Ahy17g0891 684 SUPERFAMILY ARM repeat 395 673 IPR016024 -
Ahy17g0891 684 Gene3D - 376 491 IPR011989 -
Ahy17g0891 684 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Ahy17g0891 684 MobiDBLite consensus disorder prediction 358 378 - -
Ahy17g0891 684 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Ahy17g0891 684 PANTHER U BOX DOMAIN-CONTAINING 21 681 - -
Ahy17g0891 684 Pfam U-box domain 282 352 IPR003613 GO:0004842|GO:0016567
Ahy17g0891 684 SUPERFAMILY RING/U-box 272 356 - -
Ahy17g0891 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 367 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0891 Ahy-Chr17 10336273 10338499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0891 27 679 U-box Gene Family AT3G46510 37.348 1.49e-128 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0891 - - gmx:100793498 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0891 17 10336273 10338499 Ahy17g0891 17 10336273 10338499 ECH
Ahy17g0891 17 10336273 10338499 Ahy7g0715 7 8140163 8142361 hybridization