Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0866 ATGCAACGACTGCACGAAATTCAAGACTCTTATAGATTTCTCCGCTTCTCTCTCTTCACTCACTCAGTACTCCCCACTCTCAACTACTTCACTTCCAACAACATTATTACCCCTTCTTTTCACACTGTTCCCTTGTTCTTCCTTCACTCTCTCTCTCTCTCTCTCAACTCTGATGATGCTACTTTAGATTCTCCCACCTCAACCCCTGCTATCTGCTACCATAATCTTGTGATTCTCGATATGGTAGGAAAAAGGAAGTATTTGCATCAATCCAAGCATCCATTCAATGCTTACCCCTTTGAAGCATGTGTGTATGGTTCATGGAAAGCGGTGGAGTTCATAAAAATTGAGTATGGAGTTATGTCCATACATTTCATTGATAAACGCCATATTTCTATGGAAAAAGGCCCCTCTGCAGACGTTCGGATAAGGTCGAGAATAGCTACTACTGCAGATTGCTCCTGCATTTTACGACGGGGAATTGACGTATGTGTGCTATCATCTCCTCAAGGAACTGGTGATTCGGATGAATTTGATGCTCGCGAGCCTGTTTGGAGAGATGCTAGAATTAGTTCTATACAGAGAAAGCCCCATGATTCTGAGTGCACATGCCAATTTTATGTCAACTACTATGTTAATCAAGGTTCGCTTGGTGCAGAGATGAAAACGCTTAACAAGGATATTAATGTGGTTGGATTAGATCATATCTTCATCCTCCAAAGGCTTGAACATACACATTGTGATGAAGATCAGCACTATCGGTGGACTTCAACAGAGGACTGCTCTAGAATACCACAAACTAGATTGCTGTTGGGGAAATTTTTACCTGATATTTCGTGGTTGATCGCGACATCTGTTTTAAAGAAGGTTTCTTTCTTTATAAGATCTGTGGAAAACAAGCTTGTTTATGAAGTTCTGTCAAATGACATTGTTATCCCCCCGTTCCATACCGAGTCTCATATAAATGTTGTAAACTTCAAACTGGAGAAAGACATGCTAATACCTATTGTTTCTCAAGTTATTGTATCCAGAACTGAGAGGGTTGACTATGAACATCAAGAATCCCATGAAGATGAAGTGTCACCATCATCATATAATGTTCAAGGCTTACGGCGTTCCAAGCGTCGACATGTACAACCTGACCGTTACCTTGGTTGCAATAGTGCTCCTGAGCTCAATATTGGTACTATTAGAACAAGGCCATACAAATTAGGCACATGGGAACAAGTTGATGAAGATCATGAACTGTCAATGCCATTATCTTCCCTGTTTGGATTGAAACAAATCAGTCAAGATCAGGATCTTGATAGTAGTCCTAAGGAGAGCAAGGTGAATGGTTGCCAGGAGATTATAGTTTACAATAGGAGGGCTAAAGCCAAGGAGGCGAAGCCAGGCGATGCTGATCGAGACATACAGCTCAATGAACTCGCTATTATTCCTCATCCTACTCTTAAACATCATAAGCTCAATGACATGACTTGTAGAATTGGCAAACATGAACCAGACGAAACTCCTTCGAAATATAGTCATCTGGTTAATAGCACTAAGCAGAAAAGGAATAGTGTCAATCTGTTGAATTTCAATCCAGATAATGTGCTTGCGCAGTTAGAGGAGGTGGAGAAAAGTGATGGTTTTTCTTCAAGATGTCATTATACTTATAGTTACAGCACCTCCAAGTTTCAGAGGAAGGCTTTAAGAGATCTTGATGATATGAATCTGGCACCAAAATGGGAAGGCATACATTCCAGTAAGGGAGCTCAAGATAGAAGGTACCGTCCGGCATTTTCGAGAAATAGACATCCTGATGAAGAAAGAACTTATAAAGACAGAACATTGAATGCCACAGCCTACAAGGAGTTGATAAATTCCTACTTAAAGAATATTAACACGAAACCAACGAAAGAAGAAATGCCTATTAGTGACCAGTGGAAGCAGTTCCAGGATTCACGCAGTGTCGGGAAAACGAAGGAAATAAAAATATCCAATACCGATTATGCAGAAGATACCTCTGAGTTGGATAGTTTGTGGAGAGAAATGGAAGTGTCTCTGGCATCAAGTTACATTGAAGACACAGAGGATGCGAATGCAGCCAATCTTTTCGACACTCAGGAAATATCAAAGGAAGCTTGTGAACATTACTTTAGATTGGATGATGAAATTGGAATTTGCTGCTTGAAATGTGGCTTTGTGGAGATGGACATTAAAGCTATCACACCAGCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAGGCAGAACGTCGGCAAAGAAGATGCAGAATCGAAGGCTGCTGAATTTGAAGATTTCAATCTTGTCTCAAATGTTGAGAATGAAGATGAACCTGTATTGGTGGAACATGATAATGTATGGGCATTAATTCCGGATCTTCGAAAGAAGTTGCACATCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGAGAAACATTGCCGGGTCTACAGAACCAGCACTTATGGACAAGAACTCCAGAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTCCTGATTATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCGGGAAAGAAACCTCTAGTCCTTGCACCAAAAACAACACTTTATACCTGGTATAAAGAATTTATCAAGTGGGAGATTCCAATACCGGTGTATCTAATTCATGGTCGAAGAACCTACAGGGTATTCAACCAGAAACAATCAATGGTTTTTCCCGGAATGCCAAAGCCCACGGAGGATGTCAAGCATGTTTTAGATTGCCTAGAGAAAATACAGAAGTGGCATTCACACCCAAGTGTTCTAATCATGGGATATACTTCATTTTTGACATTGATGCGAGAGGATTCAAAGTATGCACATAGAAAGTATATGGCTAAAGTTCTGAGGGAAAGTCCCGGACTCCTAGTATTGGATGAAGGGCACAATCCGAGAAGCACCAAGTCCAGGTTGAGGAAAGTTTTGATGAAGGTACAAACAGAATTGAGAATACTGCTGTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACACTCTTGTTGGCAAGACCAAAGTTTGCACATGAGGTGCTGAAAGTTTTAGACCCGAAATACAAGAAGAAGAAAGGAAAAGTGAGGGCAGTGGAGTACCGGGCAAGGAAATTCTTCATAGAAGTGATCTCTAGGAAAATCGACTCGAACAATGGCGAGGAGAGGATGCAAGGTCTTAACATGTTGAGAAATTTAACAAATGGTTTTATAGATGTTTATGAAGGTAGTAGCTCGGACGACCTACCCGGTTTGCAAATTTATACTTTGTTGATGAACACAACCGATACGCAGCATGAGATGTTGAAGAGACTGCACAAGAAAATGCAAAAGTGCAATGGATATCCTCTGGAGTTAGAGCTTTTGATAACTCTTGGGTCCATACATCCTTGGTTGATCAAAACTGCTGTATGTGCTAACAAGTTTTTCACAATGGAGGAACTGAGGGAGCTAGAGAAATGCAAGTTTGATTTGAAGATGGGGTCTAAGGTAAAATTTGTTATGAGCCTTATCTACCGCGTGGTCCAGAAGGAGAAGATCCTCATTTTCTGCCACAACATTGCACCAGTGAAGTTATTTATAGAATATTTTGAGTTGTTCTTCAAATGGCAAAAAGGGCGGGAAATTCTGGTGTTAACCGGGGAGCTAGAGCTCTTCGAGCGCGGCAGAGTGATGGATAAGTTTGAGGAACCTGGTGGAGTTTCAAAGATACTCCTTGCTTCGATTACAGCTTGTGCCGAAGGCATTAGTTTGACGGCAGCTTCTCGGGTGATCATGCTGGATTCCGAGTGGAATCCGTCGAAAACAAAGCAGGCCATCGCAAGGGCTTTTCGTCCCGGCCAGCAGAAAATGGTTTATGTGTATCAGCTCCTGGTAACCGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACATGGAAAGAGTGGGTGTCAAGCATGATTTTCAGTGAGGAGTTTGTGGAGGATCCTTCCCAATGGCAAGCTCAGAAGATTGAAGATGAAATCCTGAGGGAAATGGTTGAGGAGGACAAGTCCAAGTCATTCCATATGATTATGAAGAATGAAAAGGCTTCAACAAACAACAGATAA 4140 0.4138 MQRLHEIQDSYRFLRFSLFTHSVLPTLNYFTSNNIITPSFHTVPLFFLHSLSLSLNSDDATLDSPTSTPAICYHNLVILDMVGKRKYLHQSKHPFNAYPFEACVYGSWKAVEFIKIEYGVMSIHFIDKRHISMEKGPSADVRIRSRIATTADCSCILRRGIDVCVLSSPQGTGDSDEFDAREPVWRDARISSIQRKPHDSECTCQFYVNYYVNQGSLGAEMKTLNKDINVVGLDHIFILQRLEHTHCDEDQHYRWTSTEDCSRIPQTRLLLGKFLPDISWLIATSVLKKVSFFIRSVENKLVYEVLSNDIVIPPFHTESHINVVNFKLEKDMLIPIVSQVIVSRTERVDYEHQESHEDEVSPSSYNVQGLRRSKRRHVQPDRYLGCNSAPELNIGTIRTRPYKLGTWEQVDEDHELSMPLSSLFGLKQISQDQDLDSSPKESKVNGCQEIIVYNRRAKAKEAKPGDADRDIQLNELAIIPHPTLKHHKLNDMTCRIGKHEPDETPSKYSHLVNSTKQKRNSVNLLNFNPDNVLAQLEEVEKSDGFSSRCHYTYSYSTSKFQRKALRDLDDMNLAPKWEGIHSSKGAQDRRYRPAFSRNRHPDEERTYKDRTLNATAYKELINSYLKNINTKPTKEEMPISDQWKQFQDSRSVGKTKEIKISNTDYAEDTSELDSLWREMEVSLASSYIEDTEDANAANLFDTQEISKEACEHYFRLDDEIGICCLKCGFVEMDIKAITPAFIQHSVWHQEERQNVGKEDAESKAAEFEDFNLVSNVENEDEPVLVEHDNVWALIPDLRKKLHIHQKKAFEFLWRNIAGSTEPALMDKNSRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKKPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQKQSMVFPGMPKPTEDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLLLARPKFAHEVLKVLDPKYKKKKGKVRAVEYRARKFFIEVISRKIDSNNGEERMQGLNMLRNLTNGFIDVYEGSSSDDLPGLQIYTLLMNTTDTQHEMLKRLHKKMQKCNGYPLELELLITLGSIHPWLIKTAVCANKFFTMEELRELEKCKFDLKMGSKVKFVMSLIYRVVQKEKILIFCHNIAPVKLFIEYFELFFKWQKGREILVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAQKIEDEILREMVEEDKSKSFHMIMKNEKASTNNR* 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0866 1379 Gene3D - 1100 1379 IPR027417 -
Ahy17g0866 1379 Pfam Helicase conserved C-terminal domain 1180 1296 IPR001650 -
Ahy17g0866 1379 CDD SF2_C_SNF 1172 1308 - -
Ahy17g0866 1379 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1183 1344 IPR001650 -
Ahy17g0866 1379 SMART ultradead3 797 1035 IPR014001 -
Ahy17g0866 1379 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 100 1376 IPR044567 GO:0080188
Ahy17g0866 1379 Gene3D - 770 1056 IPR038718 -
Ahy17g0866 1379 MobiDBLite consensus disorder prediction 351 372 - -
Ahy17g0866 1379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 826 1026 IPR014001 -
Ahy17g0866 1379 Pfam SNF2-related domain 804 1032 IPR000330 GO:0005524|GO:0140658
Ahy17g0866 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 1028 IPR027417 -
Ahy17g0866 1379 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 100 1376 - -
Ahy17g0866 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1097 1360 IPR027417 -
Ahy17g0866 1379 CDD DEXHc_ATRX-like 801 1027 - -
Ahy17g0866 1379 SMART helicmild6 1212 1297 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0866 Ahy-Chr17 9973489 9979886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0866 1176 1315 RAD5 or RAD16-like Gene Family AT5G43530 32.168 1.46e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy17g0866 SNF2_N 2.20E-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0866 K10875 - gmx:100811703 1748.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0866 17 9973489 9979886 Ahy17g0866 17 9973489 9979886 ECH
Ahy17g0866 17 9973489 9979886 Ahy7g0694 7 7877450 7883881 hybridization
Ahy20g1322 20 27438843 27444471 Ahy17g0866 17 9973489 9979886 PCT
Ahy17g0866 17 9973489 9979886 Ahy20g1322 20 27438843 27444471 PCT