Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0842 ATGGTTTCAAGAGAGCAAAAGAGAGCAGCACTACTGCATGAGAAGCTTCAACTCCTTCGTTCTATTACCAACTCTCATGCTGTGAACAAAACCTCCATCATAATCGATGCATCAAAGTATATTGAAGAGCTTAAAGAAAAGGTAGAAAGACTCAATCAAGAAATAGCCACAGCAGAAACTTCAAATCATCATCATCACCATAATCCTAATTTGCCTATGGTGACAGTAGAAACCCTAGAAAAGGGATTTATGATAAATGTAATTTCAGCAAGAAGCTGCCAAGGACTACTTGTTTCAATTCTTGAAGCCTTTGAAGAGATGGGTCTCACAGTTCTTGAAGCTAGGGTTTCTTGTACGGACACTTTTCGATTCCAAGCAGTTGGAGGAGAAAATGATGAACAAGGTGAGACTATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCAATAAAGAATTGGAGCCAACAAAGTGCTGATCAAGATTAA 489 0.3926 MVSREQKRAALLHEKLQLLRSITNSHAVNKTSIIIDASKYIEELKEKVERLNQEIATAETSNHHHHHNPNLPMVTVETLEKGFMINVISARSCQGLLVSILEAFEEMGLTVLEARVSCTDTFRFQAVGGENDEQGETIDAQAVKQAVGQAIKNWSQQSADQD* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0842 162 CDD ACT_UUR-ACR-like 95 151 - -
Ahy17g0842 162 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 160 - -
Ahy17g0842 162 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 160 - -
Ahy17g0842 162 Gene3D - 2 71 IPR036638 GO:0046983
Ahy17g0842 162 Coils Coil 34 61 - -
Ahy17g0842 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 67 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0842 Ahy-Chr17 9725898 9727955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0842 5 147 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.323 6.75e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0842 - - tcc:18600910 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0842 17 9725898 9727955 Ahy7g0670 7 7615736 7617626 hybridization
Ahy20g1270 20 25048165 25050837 Ahy17g0842 17 9725898 9727955 PCT
Ahy10g0934 10 16919482 16922122 Ahy17g0842 17 9725898 9727955 PCT
Ahy17g0842 17 9725898 9727955 Ahy20g1270 20 25048165 25050837 PCT
Ahy17g0842 17 9725898 9727955 Ahy10g0934 10 16919482 16922122 PCT