Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0749 ATGTCGTCCCCTATGATGACTTCATCACCAAACAAATCCATAATAAGCAAAGAAATATCCGAAGAAGTTGAGACAGAAGATGAATTGGGTAAAAAGCTAGCGCATTACACATTAGAAGGCAATTGGGATGAAGTAAGGAAGATCTACCGGTCAAAGCCAAAGGCACACACTATAACGGTTAACAGTTCTAAGGACACGGCATTGCACGTGGCCGTGGATTTGGACGAAGAAGAAGTTGTTAAAGATCTTGTGAATTACATCGTGGAGCATAACACGGGTGCTCTGGAGATAGGGAATGAGCACGGCGACACGCCTCTCCATGTGGCGGCGTCAAGGGGGTTTGCGAAACTCTGCAAGTGCATCATGGCGGAGAGGATAGAATTGAGGACATTGAAGAACAAGAAAGGGGAGACACCATTGTTTTTTGCTGCTCTTAATTGGCACAAGGAAGCCTTCGCTTACCTCCATCACACCCATGAAAGCCTCCCCATCACTTTTCCGGAGCTTGTCCGCGACCATGACGGAGATACCATTCTCCACTGTGCTATTAGGAGGGAGCATTTTGATTTAGCGGTGATAATACTGCATTATTTTGGTGAACTTGCTACCCTCAGCAACAACAAAGGGCTCACCCCTCTCAAAGTCCTTGCTACTAGGCCATTGGCCTTCCCAAGTGGAATCAAATTTTCATGGTGGAAGTTAATCCTTTACCACTTATGGACATACTAA 729 0.4582 MSSPMMTSSPNKSIISKEISEEVETEDELGKKLAHYTLEGNWDEVRKIYRSKPKAHTITVNSSKDTALHVAVDLDEEEVVKDLVNYIVEHNTGALEIGNEHGDTPLHVAASRGFAKLCKCIMAERIELRTLKNKKGETPLFFAALNWHKEAFAYLHHTHESLPITFPELVRDHDGDTILHCAIRREHFDLAVIILHYFGELATLSNNKGLTPLKVLATRPLAFPSGIKFSWWKLILYHLWTY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0749 242 Pfam Ankyrin repeats (3 copies) 82 155 IPR002110 GO:0005515
Ahy17g0749 242 Gene3D - 20 220 IPR036770 -
Ahy17g0749 242 SMART ANK_2a 174 203 IPR002110 GO:0005515
Ahy17g0749 242 SMART ANK_2a 63 92 IPR002110 GO:0005515
Ahy17g0749 242 SMART ANK_2a 101 130 IPR002110 GO:0005515
Ahy17g0749 242 SMART ANK_2a 135 164 IPR002110 GO:0005515
Ahy17g0749 242 PANTHER CASKIN 42 238 - -
Ahy17g0749 242 SUPERFAMILY Ankyrin repeat 34 217 IPR036770 -
Ahy17g0749 242 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Ahy17g0749 242 PANTHER ANKYRIN REPEAT PROTEIN 42 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0749 Ahy-Chr17 8105434 8106441 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0749 43 219 Miscellaneous Gene Families AT5G60070 25.121 9.76e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0749 - - ahf:114925611 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0749 17 8105434 8106441 Ahy7g0337 7 2737954 2746456 hybridization
Ahy17g0749 17 8105434 8106441 Ahy17g0482 17 4645050 4655266 PCT
Ahy17g0749 17 8105434 8106441 Ahy7g0337 7 2737954 2746456 PCT
Ahy17g0482 17 4645050 4655266 Ahy17g0749 17 8105434 8106441 PCT
Ahy7g0337 7 2737954 2746456 Ahy17g0749 17 8105434 8106441 PCT