Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0628 ATGAATGACCGTGTTGATCTGGTGGACAAAATCACTCCGTGGAGAGAATCATGGAAAGTGCATGTTAAAGTTGTCAAGTTGTGGTACCACAAGAATCCTGCTTTGGATTCTTCTCAAAATCTATTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAGGCCACCATTAGAGATCAGCTAATATCAAAATTTGCCTTGTCTCTAAATGAAGGAATTGTGTACTTGATGACCCACTTTACAGTTGTACCCAACACTGGTTTGAACAGGGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACCTCTGTTGTTTCTGTGGTATGTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCATTAGATGAAATTGATCAAATGACAAAGCACCACAGTTTCCTGATTGACTTTGTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGCTGGTGAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGGAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATTTGTTAGAATATGATAAGTTACAAAAATATGCAAGATCTCCCCTGGTTGTCCTCGAGTCTTTTAAAATCAAAGCCATTGAAGGTGGGGTAATCCTACAGAATGTGATAGATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGGCCGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGCCTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATTCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACACATGTGTGTGTGGTCAAGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGAATGTTATGGTCAAATATGGAATTCGGGTAAAGATTCAGGATGCTAGGTGTACTGTTTTGTTTGTTTTGCTTGATAATGCGGCAACAAAACTATTTGGAAGAACCTGTTCTGAAGCATTTCTTAGCATAGAAGATGAATTTCCAGTTGATCCTAGTGTGCTTGCAGTTTGTCGGTCATATTCTCCACAAATGTTTGATCATGTTGTTGGAGAGGAGAAAGTTTTTAAGGTTGAAATTGATTCTGCAGTTGATCCAGATTACTCCAGTTGCTTTAAAATTGTGAATGTCTTTAGTCATAATCAAGAACCAGTTGCAGTCGATGATTATATCAATGTATGA 1335 0.385 MNDRVDLVDKITPWRESWKVHVKVVKLWYHKNPALDSSQNLLHMVLMDEKLHKIQATIRDQLISKFALSLNEGIVYLMTHFTVVPNTGLNRVTKHRFRLLFQYNTSVVSVVCPRIPHSGLCFASLDEIDQMTKHHSFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYARSPLVVLESFKIKAIEGGVILQNVIDVSRLFINPDIPEAVEFLSRFSVASYGFSSLVTNDLGYLVSKVDGDYFNSKEISNIQDLHSDNGDSHYFVIGTIKEVMDEPDWWYYTCVCGQAVVEHEDLYLCDACGSCVENVMVKYGIRVKIQDARCTVLFVLLDNAATKLFGRTCSEAFLSIEDEFPVDPSVLAVCRSYSPQMFDHVVGEEKVFKVEIDSAVDPDYSSCFKIVNVFSHNQEPVAVDDYINV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0628 444 Gene3D - 262 434 IPR012340 -
Ahy17g0628 444 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Ahy17g0628 444 SUPERFAMILY Nucleic acid-binding proteins 7 108 IPR012340 -
Ahy17g0628 444 PANTHER REPLICATION FACTOR A 1, RFA1 21 366 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy17g0628 444 CDD RPA1_DBD_A_like 19 107 - -
Ahy17g0628 444 Pfam Domain of unknown function DUF223 44 110 IPR003871 -
Ahy17g0628 444 Gene3D - 7 111 IPR012340 -
Ahy17g0628 444 Pfam Replication factor-A C terminal domain 291 370 IPR013955 -
Ahy17g0628 444 CDD RPA1_DBD_B_like 140 242 - -
Ahy17g0628 444 Gene3D - 114 248 IPR012340 -
Ahy17g0628 444 SUPERFAMILY Nucleic acid-binding proteins 269 420 IPR012340 -
Ahy17g0628 444 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 21 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0628 Ahy-Chr17 6451503 6454863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0628 1 368 Core DNA Replication Machinery Family AT5G08020 21.827 1.04e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0628 - - aip:110268227 870.152