Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0619 ATGGCTAAGAAGCGAAAGGTTCGACCTTCCGAGCCCGAACCCCCCAAACAAGAGCAAGAGCAAGAGCTTCAACAACAACAGCCACCACACGAAGAACTAACCTTAGATCAACAACAAAGCATGACCATCGATGACGCAGCGCCACAACAAGACCAACCTCAAAACGACATCGCAATAGAAGAAGAACAAAACAACGAAGGAGAAGGAGAAGAAGAAGCAGAAGAAGAACAGCAACAGGAGGATCAGCAGCAACAACAGCAAGGAGGGGGAGAAACCCTAGAAAGCCAGGAAGAGCAGATTCAACAGCAGGCTTCGGGTTCGGATTCGGTCCGGGCCGAGGCTAACGGCTCCGAGCAGCAACAGGAAGAGGAGGACCTCGATTTGGAAGACGAGCCAATCGAGAAGCTTCTAGAACCCTTCACGAAGGAGCAGCTACACTCCCTTGTCAAGCAAGCCGTCGAGAAGCACCCCGATTTCTCCGAAACCGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGGAAGATCTTCGTCCATGGGCTTGGCTGGGACACTACCGCAGAAACCCTAACCGCCGTGTTCGGAAAATACGGCGAAATTGAAGACTGCAAGGCCGTGACGGACAAAATCTCCGGAAAATCGAAGGGATACGCGTTCATCCAATTCAAGCACCGCGCTGGAGCGCGAAGGGCGCTTAAGCAGCCGCAGAAGAAGATTGGGAACAGAACAACTTCGTGCCAGTTGGCCTCTGCGGGACCTGTTCCGTCGCAGCAGGCGGCCGCGCCGGGTGCCCCGGTTGTGTCAGAGTATACACAGAGGAAGATCTTTGTTAGCAATGTGAGTGCGGAGATTGATCCTCAGAGGCTTCTGGAATTCTTCAAGCAGTTCGGGGAGATTGAGGATGGGCCTCTTGGGATTGACAAGCAGACAGGGAAGCCTAAAGGGTTTGCTCTTTTCGTGTACAAAACAGTTGAGAGTGCGAAGAAGGCGTTGGAGGAGCCAAACAAGAACTTTGAAGGGCACACCCTTTATTGCCAGAAGGCTGTTGATGGTCCCAAAGGGTTCAATAAGGGTGGATTTCATCAGCAGCAGCATCACCATCAACAGCACTATCAGCACCAATCACATCACCATCATCAGGGTCACTTTCATAGGAAGGATAAGAACAAGTATTCCGCTGGTGGGCCTGCACATGGCGGTGGTGCTGGTCACTTGATGGCGCCGTCGGCTCCAGGGCCTGCTGTTGGAGGTTACAATCCTGGTGTGCCACCTGCTGCTGCGGCGCAGGGTCTCAACCCTGCACTTGGGCAGGCGCTGACGGCGTTGCTTGCTAATCAGGGTGCCGGATTGGGACTTGGGAACCTGCTTGGAGGGATCGGTGGTGCTCCTGTGAACCAGCCTGGTCCACCTGCTGGTGGATATGGGACTCAGCCAGCTATGGGATATGGGAACCAGCCGGGGATGCAGCCGCAGTACCAGAATCCTCAGATGGGGCAGAGTAGTGGGGTTAGGCCTCACCCCGGTGCTGGCGCACCTTACATGGGTCATTAG 1551 0.5474 MAKKRKVRPSEPEPPKQEQEQELQQQQPPHEELTLDQQQSMTIDDAAPQQDQPQNDIAIEEEQNNEGEGEEEAEEEQQQEDQQQQQQGGGETLESQEEQIQQQASGSDSVRAEANGSEQQQEEEDLDLEDEPIEKLLEPFTKEQLHSLVKQAVEKHPDFSETVRQLADVDPAHRKIFVHGLGWDTTAETLTAVFGKYGEIEDCKAVTDKISGKSKGYAFIQFKHRAGARRALKQPQKKIGNRTTSCQLASAGPVPSQQAAAPGAPVVSEYTQRKIFVSNVSAEIDPQRLLEFFKQFGEIEDGPLGIDKQTGKPKGFALFVYKTVESAKKALEEPNKNFEGHTLYCQKAVDGPKGFNKGGFHQQQHHHQQHYQHQSHHHHQGHFHRKDKNKYSAGGPAHGGGAGHLMAPSAPGPAVGGYNPGVPPAAAAQGLNPALGQALTALLANQGAGLGLGNLLGGIGGAPVNQPGPPAGGYGTQPAMGYGNQPGMQPQYQNPQMGQSSGVRPHPGAGAPYMGH* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0619 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Ahy17g0619 516 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 503 - -
Ahy17g0619 516 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 503 - -
Ahy17g0619 516 CDD RRM_RBM24_RBM38_like 174 249 - -
Ahy17g0619 516 Gene3D - 261 395 IPR012677 -
Ahy17g0619 516 Gene3D - 144 260 IPR012677 -
Ahy17g0619 516 MobiDBLite consensus disorder prediction 482 501 - -
Ahy17g0619 516 MobiDBLite consensus disorder prediction 467 516 - -
Ahy17g0619 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 350 IPR000504 GO:0003723
Ahy17g0619 516 MobiDBLite consensus disorder prediction 1 129 - -
Ahy17g0619 516 MobiDBLite consensus disorder prediction 80 116 - -
Ahy17g0619 516 SUPERFAMILY RNA-binding domain, RBD 269 366 IPR035979 GO:0003676
Ahy17g0619 516 MobiDBLite consensus disorder prediction 1 18 - -
Ahy17g0619 516 MobiDBLite consensus disorder prediction 61 79 - -
Ahy17g0619 516 SMART rrm1_1 175 247 IPR000504 GO:0003723
Ahy17g0619 516 SMART rrm1_1 274 346 IPR000504 GO:0003723
Ahy17g0619 516 MobiDBLite consensus disorder prediction 19 60 - -
Ahy17g0619 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 343 IPR000504 GO:0003723
Ahy17g0619 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 243 IPR000504 GO:0003723
Ahy17g0619 516 Coils Coil 57 79 - -
Ahy17g0619 516 MobiDBLite consensus disorder prediction 354 408 - -
Ahy17g0619 516 CDD RRM_RBM24_RBM38_like 273 348 - -
Ahy17g0619 516 SUPERFAMILY RNA-binding domain, RBD 165 255 IPR035979 GO:0003676
Ahy17g0619 516 MobiDBLite consensus disorder prediction 363 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0619 Ahy-Chr17 6340017 6344553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0619 269 352 C2H2 Transcription Factor Family AT2G19380 32.143 2.14e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0619 K12741 - gmx:100792637 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0619 17 6340017 6344553 Ahy7g0480 7 4693681 4698180 hybridization