Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0580 ATGGAAGAATCAGGAGAATTGCAATCAGATGAAAATAAAGCTTCTACAGAGAAAAAAAATAAAAGAAGACTCAAAACACCTTCCCAGGTTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCACGGAGGAAATGAAACAAGATCTTGCTGAGGAGTTAGGGTTGACGGAGAAGCAAATTTCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAACGGTTGTTGAAAGATGAAGCGATTGGTAATGGACGACAGGATCGTTCAAGTGGTGTCATCCAGGACCGTGGTAGTGGACGGCAAGATTCATGCGGAAGCAGCAAACATGGTGATTACCGTTATGTGGATCCGAAAGAGGTAGAAAGTCATGGCCTGTACAATCGTGATTTGTCAGTTCCGGATATGACCTACGGACATAGGAACCAGTATGCAGAAAACGCAAGCGAAATGGATGATACATCATCTGATAGTGGCTCATTTTTGCAAGATCGCATGTTTCCTCAAGGCCAGGATCCATACGATGTGGATCCTTCAAGGTATCCGACTCACAATGGAGCTCTTCCACCCCTTAATCCCAAGGGTGGAAACATAGGATATAAACCATCAGGATATTTGAAAGTCAAGGGCGAGATAGAACATGCTGCTATAACTGCCGTAAAGAAGCAATTAGGGAGGCATTATCAAGAAGATGGTCCACTCCTTGGTATAGAATTTGATCAGCTTCCCCCAGGGGCATTTGAAGGCCAAACTGCAGATCCAGTTCATGAACCGTATACCATTGCAAATCCTGCACTTCTTACTTCCCCAGAAGTCTCCACTGGAAAAAGGCAATCCAACATTAGCACAAAATATGTTTCTTACGCTAAATTTAGTTCCAAAGATTCACATGAAGGGGTTGAATTTGGCTCCTTGCATGACTCTGATTTCCCGGATAAGCAGGATAAGAAGGTCCGCCAGAGTATTAAACAGAGGCAACCCATTTATGGTTACGCCAACCATCTTCCTGGCCGGAACTCCTCGGATTTGTATGATGACTCTAACGGAGAAGCATCTGCTTATACTAAAGTTCGTAGTATCGTCTCGAAGCATGGTATTGAGGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGAGAACCCCATGGTTAAGCAGACAGATTTGATGCAAGGCTATGATAACATCAATCCAAAAAATGTGAAAAGAAGTGAACATGTTAAGCCCAAGCCCGCAAAATCAATCCGTCATCCTCGAATGCCTGTGGATGCCGAAGAAAGGGGGCTACAACCTATGAGGGTGGCAAAGGAAGAGTTGCATAAGGGGGAGAGGAAGGTGAAAAAGTATCACGATTCTTATGGAGCAAGGATGCTTCCAAATGAAATCACGGCTGCGAAACGAGCAAAAGTTGATCTGCATAAACAATTCAATCCAAAACAAGCACCTATTGCTGAGATAGAACAAAGGAAAAACCCGAGATCTGCTGCAGAGATGCCGATGCCATTTAGCTTTAGTGAGGATGAATCCCTTGGCCTCGATTCGAGTTCCTCGCTGGATTAA 1569 0.4366 MEESGELQSDENKASTEKKNKRRLKTPSQVMALEKFYNEHKYPTEEMKQDLAEELGLTEKQISGWFCHRRLKDKRLLKDEAIGNGRQDRSSGVIQDRGSGRQDSCGSSKHGDYRYVDPKEVESHGLYNRDLSVPDMTYGHRNQYAENASEMDDTSSDSGSFLQDRMFPQGQDPYDVDPSRYPTHNGALPPLNPKGGNIGYKPSGYLKVKGEIEHAAITAVKKQLGRHYQEDGPLLGIEFDQLPPGAFEGQTADPVHEPYTIANPALLTSPEVSTGKRQSNISTKYVSYAKFSSKDSHEGVEFGSLHDSDFPDKQDKKVRQSIKQRQPIYGYANHLPGRNSSDLYDDSNGEASAYTKVRSIVSKHGIEGMRSDSASNHSDHYEENPMVKQTDLMQGYDNINPKNVKRSEHVKPKPAKSIRHPRMPVDAEERGLQPMRVAKEELHKGERKVKKYHDSYGARMLPNEITAAKRAKVDLHKQFNPKQAPIAEIEQRKNPRSAAEMPMPFSFSEDESLGLDSSSSLD* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0580 522 Gene3D - 8 91 - -
Ahy17g0580 522 CDD homeodomain 19 75 IPR001356 GO:0003677
Ahy17g0580 522 MobiDBLite consensus disorder prediction 79 136 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 297 322 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 297 347 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 148 172 - -
Ahy17g0580 522 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Ahy17g0580 522 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Ahy17g0580 522 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 518 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 148 165 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 107 126 - -
Ahy17g0580 522 SMART HOX_1 18 80 IPR001356 GO:0003677
Ahy17g0580 522 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
Ahy17g0580 522 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 518 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 479 522 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 88 106 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 7 24 - -
Ahy17g0580 522 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0580 Ahy-Chr17 5614338 5619258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0580 3 263 Homeobox Transcription Factor Family AT4G03250 57.955 2.01e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ahy17g0580 Homeodomain 9.40E-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0580 - - gmx:100803515 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0580 17 5614338 5619258 Ahy17g0580 17 5614338 5619258 ECH
Ahy17g0580 17 5614338 5619258 Ahy7g0418 7 3629018 3633879 hybridization