Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0579 ATGGAAGGGTTCGGAATGACTTCGGATCTTAGCAGAACCGGTGCTGTAGAACGAGACATTGAGCAGGCTATTACTGCTTTAAAGAAAGGAGCTTACCTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCGTTCAGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGCCATGTGTCTAGAATTATATCTGGACAACGCACGCCAATCTTTCAAAGGTATCCACGGCCTGAAAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAAGTTTGGTTTAGTGGTTTAAAAGCATTAATTTCACGTAGTCATCACCGAAAATGGAGGACAGAGTCAAGAAGTGATGGTATTCCTTCTGAAGCTAATAGTCCTAGAACATACACCAGAAGAAGTTCTCCCATGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTCGTCTTCACAGTCCTTATGACAGCCCACCTAAAAATGGTTTAGATAAAGCATTATCGGATGTGATGTTGTATGCTGTCCCACCAAAGGGTTTCTTCCCTCCAGATTCTGCAAGTGCTTCAGTCCACTCTGTGTCGTCTGGAGGATCAGATAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGCCATGATGATGGCGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGTACAGGTGATGGTGTTCTGGGTGGTGGGACTCATCGAGTTGGGAGTTCTTTGGGTGTAAAAATGGACTCTCTTTTTCCAAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCCTGCGGTGGACGACATGCGGCCTTAGTGACCAAACAAGGTGAAATTTTCTCTTGGGGGGAAGAATCAGGAGGTAGGCTTGGGCATGGTGTTGATTCTGATGTTCTCCATCCAAAGCTTATCGAAACTTTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACATACAATTATGGTCTTCTGGGGCATGGTAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCCTGGAGGGCATACATGTTTCATCTATTTCTTGTGGACCATGGCACACTGCTGTCGTAACCTCTGCTGGGCAATTGTTTACTTTTGGTGATGGTACATTTGGTGTTTTGGGTCATGGAGATCGTAAAAGTGTTTCATTACCTAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTGTCCGGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTCACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCAGCCCTGGTTGAACCCAATTTCTGTCAGGTTGCTTGTGGACATAGTCTGACTGTTGCGCTTACCACCTCTGGGCATGTCTATACAATGGGTAGTCCTGTCTATGGTCAGTTGGGAAATCCTCAAGCTGATGGGAAGCTACCAAGCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATTGCTTGTGGTGCATATCATGTTTCAGTTTTAACTTCAAGGACAGAAGTTTACACATGGGGTAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACAGATGACAGAAATGTCCCAACATTAGTAGAAGCATTGAAAGACAAACAGGTCAAAAGTGTTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTACATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGTCTTCCATTTAATTTCAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTCTGTCATTCATGTAGCAGTAAGAAATCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGCGTCTGTGACAACTGTTTTAATAAACTAAGGAAATCTATGGAAACTGATTCTTCATCCCATTCTTCTGTGAGCAGAAGAGGAAGTATCGTTCCAGGGTCACTTGAGTTAATTGATAAGGATGATAAAATGGATTCGAGATCTCGTAGTCAACTTGCTAGGTTTTCTTCAATGGAGTCCTTGAAGCAAGTGGATAGCAGATCTTCTAAAAAAAACAAGAAGTTGGAATTCAACAGTAGTCGCGTCTCTCCTGTTCCAAATGGGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTCTTCTCAGCATCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCTCCAATATCTAGACGACCTAGTCCACCACGTTCAACTACTCCAACTCCAACACTGGGAGGTCTTACTTCCCCAAAGATAGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGACAGCAGGTGGAAAACCTGACTAGGAAAGCGCAACTTCAAGAAGTTGAGTTGGAAAGAACAACCAAACAGCTAAAAGATGCTATAGCAATTGCTGGAGAGGAAACTGCGAAGTGCAAAGCTGCAAAGGAAGTGATCAAATCTCTTACCGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCAGCTAGGAATGTCAAATCGCCTTCTCTTGCTTCCATTGGTTCCAATGAGCTTAGCTATGCTTCCATTGATCGATTGAATATTCAAGCAACAAGCCCAGAAGCAGATTTAACTGGATCAAATAATCAGTTGCTTTCAAATGGATCCAGCACTGCCAGCAACCGTAGTAGTGCTGGTCACAATAAACAGAACCAGTCAGAGGTAACTAACAAAAATGGGAGCAGAACAAAGGAGAGTGAATCCCGGAGTGAGAATGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACCTCCCTTCCTGGAGGCGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGAAAGCGGTTCAGCGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAGCAATACAACGTTCGCATGATTGACAAGTCCAGCGTTGGTGTTGGGAGTGAAGACCTGGCTCACTGA 3315 0.4368 MEGFGMTSDLSRTGAVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPMNSPFGSNESLQKDSGDHLRLHSPYDSPPKNGLDKALSDVMLYAVPPKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGSSLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIETLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPSRVEGKLSKSFVEEIACGAYHVSVLTSRTEVYTWGKGANGRLGHGDTDDRNVPTLVEALKDKQVKSVACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKSMETDSSSHSSVSRRGSIVPGSLELIDKDDKMDSRSRSQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRQQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASIGSNELSYASIDRLNIQATSPEADLTGSNNQLLSNGSSTASNRSSAGHNKQNQSEVTNKNGSRTKESESRSENEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Ahy17g0579 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 134 191 - -
Ahy17g0579 1104 SUPERFAMILY RCC1/BLIP-II 266 657 IPR009091 -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 746 803 - -
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Ahy17g0579 1104 CDD FYVE_like_SF 665 718 - -
Ahy17g0579 1104 Pfam Transcription factor regulating root and shoot growth via Pin3 1030 1085 IPR013591 -
Ahy17g0579 1104 Gene3D - 18 136 IPR011993 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 541 559 IPR000408 -
Ahy17g0579 1104 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Ahy17g0579 1104 Pfam Unstructured region between BRX_N and BRX domain 956 1024 - -
Ahy17g0579 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Ahy17g0579 1104 Coils Coil 866 907 - -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 1019 1035 - -
Ahy17g0579 1104 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1090 - -
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Ahy17g0579 1104 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Ahy17g0579 1104 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Ahy17g0579 1104 SMART fyve_4 654 723 IPR000306 GO:0046872
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 980 1018 - -
Ahy17g0579 1104 CDD PH_PLC_plant-like 18 128 - -
Ahy17g0579 1104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 729 IPR013083 -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 980 1035 - -
Ahy17g0579 1104 Gene3D - 248 497 IPR009091 -
Ahy17g0579 1104 Gene3D - 498 667 IPR009091 -
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Ahy17g0579 1104 Coils Coil 922 942 - -
Ahy17g0579 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 789 803 - -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 142 172 - -
Ahy17g0579 1104 Pfam FYVE zinc finger 656 722 IPR000306 GO:0046872
Ahy17g0579 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 499 548 IPR000408 -
Ahy17g0579 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 605 652 IPR000408 -
Ahy17g0579 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 551 599 IPR000408 -
Ahy17g0579 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Ahy17g0579 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Ahy17g0579 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 380 432 IPR000408 -
Ahy17g0579 1104 SUPERFAMILY FYVE/PHD zinc finger 656 727 IPR011011 -
Ahy17g0579 1104 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1090 - -
Ahy17g0579 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 328 IPR000408 -
Ahy17g0579 1104 SUPERFAMILY PH domain-like 19 127 - -
Ahy17g0579 1104 Pfam Transcription factor BRX N-terminal domain 917 950 IPR027988 -
Ahy17g0579 1104 ProSiteProfiles BRX domain profile. 1031 1086 IPR013591 -
Ahy17g0579 1104 MobiDBLite consensus disorder prediction 834 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0579 Ahy-Chr17 5595211 5602891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0579 926 1095 Major Intrinsic Protein MIP AT1G31880 33.516 8.34e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0579 - - gmx:100802464 1926.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0579 17 5595211 5602891 Ahy17g0579 17 5595211 5602891 ECH
Ahy17g0579 17 5595211 5602891 Ahy7g0417 7 3610564 3618233 hybridization