Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0572 ATGGCTTTCTTTAGGAATTTTCTAAATGATAATGTCTCCCATAGCGTCATTGAAGATAAAGACCAAGAACAGAATGCTGATAGAGTACATAGATCAGTAGGTAATGAGTGTGTGGATGCAACGTCTGGTGAGAAGGAATTTGATATGAACATGGAGGCACAATACCAGAGTGATGGTGAGCCAGATGGGGTTAATGGAATGCAAAATGAAGCAACAACTGATGATGGAGTTGGTGAGAGAGAATCAAACTTAGAGACTACTGGTAGTAAAACAGCTATGGTTGGAGAGTGGGGTTCAACATTTTTTCAGGACTGCCGGCCTATGTGCCCTCAGGATGGTTCTGACTCTGGGCAGGAATCGAAAAGTGGATCAGAATATAGAAATGAAGATGGCTCTGAAGAAAATTCGTTTGATGGAAGAGGGGACAGATTAGACTCAGAGGATGATGAAGGACAAAATGAAGCAGGAAAAGCTCCAAGAGGCCAGTCTGATGTTCCTGCTGAGGAGATGTTGTCTGATGAATACTATGAGCAGGATGGGGAGGAGCAGAGTGATTCGCTGCATTACAAGGGGGCACATAAAGCAAGCGGGTTGAATTCATGGCCTCAACGGATGTCCAACAATGCCAACAGCACTGGGCGTAGGAGGTCTAGAATTGTAGATGATGGCGAAGATGATGACGGTGATAATGATGATGATGACGGTGATGCTGATTATGAGGAGGAGGATGAAGGAGATGAAGATGACCCAGATGATGCAGACTTTGAGCCTGCAGCAGGTGGTCGTGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCTGATGAAGATGATGACAGTGATGTAAATCTAGATGTTTCAGACGATGATGATGATGACGACGATGACGATTCTTACTATGCCAAAAAACCTAAGGCAAGGCAAAGAGGTAAAGTTGGACGAAGCATAAAGTCTAGTAGAGATCGCAAAACATATGCTTCGTCTGGTCGACAGAGAAGAGTTAAATCTTTTGAAGATGAGGAATCAACAGCAGATGATTCTGACAGTGATAGTGATGAGGATTTCAAGAGCGTAAAGAAGAGAGGAGCTCATGTCCGCAAGAATAATGGTCGCTCTTCTGCAGCCAGTAGTTTATCTTTGCGCAACAGTGAGGTTCGCACGTCTAGTAGATCAGTTAGGAAGGTATCATATGTTGAAAGCGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCACAGAAGAATATTTTTCAGGAAGAGATTGAAGAGGATGATGGTGACTCTATTGAAAAAGTGCTTTGGCATCAGCCGAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTGATGAATCACTTGTTTGAGTCTGAAATTGATTGGAGCGAGATGGAATTCTTGATAAAATGGAAGGGCCAGTCGCATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAATCTTAGTGGTTTCAAGAAGGTTTTGAATTATACTAAGAAGATAATGGAGGACATTAGATACAGGAAGACAATCTCAAGAGAGGAGATTGAGGTCAATGACGTGAGTAAGGAGATGGATTTAGATATTATTAAACAAAACAGTCAGGTGGAAAGAATAATTTCAGATAGGATCATTAAAGATAATGGTGGCAATGTTATTCCTGAATACTTGGTCAAGTGGCAAGGATTATCCTATGCTGAAGCGACCTGGGAAAAGGACACTGATATTGCTTTTGCTCAACATGCTATTGATGAATATAAGGCTCGTGAAGCTGCAATGTCTGTTCAAGGAAAGACGGTAGATTCCCAGCGCAAGAAGAGCAAATTAAGTCTGCGGAAGCTTGAGGAACAACCCGAATGGTTGAGGGGTGGAAAGCTCCGTGATTATCAGCTTGAGGGTCTGAATTTTCTTGTTAACAGCTGGAGAAATGATACGAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTACCACTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATCATTATATATGTTGGAACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTACAATGATAAAAAGCCTGGAAAACCTATTAAGTTCAATGCGCTGTTGACTACATATGAAGTAGTTTTGAAAGACAAGGTTGTTCTCTCCAAGATCAGATGGAGTTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCGCAGCTATATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTACTTATCACTGGAACTCCTCTACAGAACAGTGTTGAAGAACTATGGGCTTTGCTGCACTTCCTTGATCCTGACAAGTTCAGTAGCAAGGATGATTTCGTACAGAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTGCGAAGAGTTATCAAAGATGTCGAGAAATCGTTACCCCCTAAAATTGAACGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAGCGCAATTTTCATGATTTGAACAAAGGAGTTCGCGGGAATCAGGTTTCCCTTCTAAATATTGTAGTGGAATTAAAGAAATGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAAGTAGTGACAACAGTAAGCGAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGACAAGCTACTTGTCAGATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTGGATATACTCGCAGAGTATATGTCGTTACGCGGGTTTCAATTTCAGAGACTTGATGGCAGTACAAAAGCTGAGCTTCGTCAGCAGGCAATGGATCACTTTAATGCACCTGGAAGTGAGGATTTTTGTTTCCTCCTTTCAACACGTGCAGGAGGTCTGGGTATCAACCTTGCAACTGCAGATACTGTCATTATATTTGATTCAGATTGGAACCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCATAGAATTGGCCAACAAGAAGTTGTGAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAGGATATTTTGGAACGTGCCAAAAAGAAGATGGTTCTTGACCACTTGGTCATACAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCAAAAAAAGGAGGATGCTTTTTTGACAAAAATGAGCTATCCAAAATATTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGACGAAGAAAGCAAGAAACGACTCTTAAGTTTGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAACAAGGAAATGAATTATTAAGTGCATTTAAGGTGGCCAATTTTTGTAACGATGAAGATGATGAAAGCTTTTGGAGTCGTTGGATTAAGCCCGATGCTATAGTCCAAGCAGAGGATGCTCTTGCTCCGCGTTCTGCAAGGAATATTAAAAGCTATGCAGAGGATAATCAATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGATCCTGAACCACCTGAACGAGCTCAGAAACGCCGGAAAGCAGAGTACTCAGCTCCTGCAGTACCAATGATTGATGGAGCATCTGCCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAGCCAAATTGACTTGATTGTTGCTGAGGTTGGTGGTGCACTTGGAGCTGCTTCACTTGAAGCACAGTGTGAACTCTTCAATGCTCTAATTGAGGGTTGTACAGAGGCAGCAGAACTTGGCAGTCTGGATCCAAAGTATTGCAACCAGGGGCCTTTGCTGGATTTTTTCGGTGTCCCAGTGAAGGCGAATGATCTACTTGCCCGTGTCCAGCAACTTCAACTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCCATTCAACAGTTCCGTATTTTATCATATCTCAAGCCTTCAAACTGGTCGAAAGGTTGTGGATGGAACCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTTTCATGGATTTGGTAATTGGGAAAAGATTAGATTAGATGAACGGCTTGGTCTTAACAAAAAAATTGCACCAGCAGAACTCCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGATCGCGCAAATGCCCTTTTGGAGCAGGAACTTGCTGTTCTTGGTGTGAAAAATGCTAATACCAGGGCTGGACGGAAACCTTCCAAGAAAGAAAGAGAACATATGATGAACAACACGCCACTGTTGCGTGGGCAGGAGAAGAAGAAAATGGGTTCTGCTAAAGTCAATGTCCCAATGAGAAAGGATAGACCTCAGAGACCGCAGAAGGTTGAACCTATAGTAAAAGAGGAGGGCGAAATGTCAGATGACGAGGAAGTATATGAGCAGTTCAAGGAAGTAAAGTGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGGCTTCACAGGTTGCAGACAACCAGTGCAAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGTAACTATTTACAACAACTTGGGCGAAGGATAGATGAAATTGTCATTGATCATGAAGAAGAGCCATATAAGCAAGATAGAATGACTGTTCGGCTGTGGAAATATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCAGGGGTTGGCCCCTCAAATGCCAATGGTTCAGCATCTCTTTCATTTGGCAGAAATGGAAACCCATTTGCTCACCAACTGGAGAGGCCAAGAAGATTCAAAAATGTTACAACCTACCAAATGCCAGAACCAGTTAATAGTACAGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGAGGACCATTTCCAGGGTCAGCCACCACCTCAAAGAACCATGAGCAACGGTATTCGTGTCACTGATCCTAGTGCACTTGGTATCCTTGGTGCTGGACCATCTGACAAACGTTTTGCCGGTGAGAAACCGTTTAGGGCACAACCTGGTGGGGGCTTTCCTTCAAGGCAAGGCTTCTCTTCAGGTATAAAGTAG 5328 0.42 MAFFRNFLNDNVSHSVIEDKDQEQNADRVHRSVGNECVDATSGEKEFDMNMEAQYQSDGEPDGVNGMQNEATTDDGVGERESNLETTGSKTAMVGEWGSTFFQDCRPMCPQDGSDSGQESKSGSEYRNEDGSEENSFDGRGDRLDSEDDEGQNEAGKAPRGQSDVPAEEMLSDEYYEQDGEEQSDSLHYKGAHKASGLNSWPQRMSNNANSTGRRRSRIVDDGEDDDGDNDDDDGDADYEEEDEGDEDDPDDADFEPAAGGRAANKDKDWEGEGSDEDDDSDVNLDVSDDDDDDDDDDSYYAKKPKARQRGKVGRSIKSSRDRKTYASSGRQRRVKSFEDEESTADDSDSDSDEDFKSVKKRGAHVRKNNGRSSAASSLSLRNSEVRTSSRSVRKVSYVESEESEEADEGKKKKSQKNIFQEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMNHLFESEIDWSEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVNDVSKEMDLDIIKQNSQVERIISDRIIKDNGGNVIPEYLVKWQGLSYAEATWEKDTDIAFAQHAIDEYKAREAAMSVQGKTVDSQRKKSKLSLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKVVLSKIRWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFSSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKRERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGCFFDKNELSKILRFGAEELFKEERNDEESKKRLLSLDIDEILERAEKVEEKEAEGEQGNELLSAFKVANFCNDEDDESFWSRWIKPDAIVQAEDALAPRSARNIKSYAEDNQSERSNKRKKKDPEPPERAQKRRKAEYSAPAVPMIDGASAQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIVAEVGGALGAASLEAQCELFNALIEGCTEAAELGSLDPKYCNQGPLLDFFGVPVKANDLLARVQQLQLLAKRISRYEDPIQQFRILSYLKPSNWSKGCGWNQIDDARLLLGIHFHGFGNWEKIRLDERLGLNKKIAPAELQHHETFLPRAPNLRDRANALLEQELAVLGVKNANTRAGRKPSKKEREHMMNNTPLLRGQEKKKMGSAKVNVPMRKDRPQRPQKVEPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQQLGRRIDEIVIDHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSNANGSASLSFGRNGNPFAHQLERPRRFKNVTTYQMPEPVNSTGKSEAWKRRRRAESEDHFQGQPPPQRTMSNGIRVTDPSALGILGAGPSDKRFAGEKPFRAQPGGGFPSRQGFSSGIK* 1776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 199 214 - -
Ahy17g0572 1775 Pfam Chromo (CHRromatin Organisation MOdifier) domain 544 598 IPR023780 -
Ahy17g0572 1775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 647 819 IPR014001 -
Ahy17g0572 1775 ProSiteProfiles Chromo and chromo shadow domain profile. 430 518 IPR000953 -
Ahy17g0572 1775 SUPERFAMILY Chromo domain-like 427 510 IPR016197 -
Ahy17g0572 1775 SMART helicmild6 981 1065 IPR001650 -
Ahy17g0572 1775 Pfam SNF2-related domain 654 923 IPR000330 GO:0005524|GO:0140658
Ahy17g0572 1775 Gene3D - 866 1096 IPR027417 -
Ahy17g0572 1775 Gene3D - 1366 1476 - -
Ahy17g0572 1775 SUPERFAMILY Chromo domain-like 522 598 IPR016197 -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1700 1715 - -
Ahy17g0572 1775 CDD CD1_tandem 428 508 - -
Ahy17g0572 1775 Gene3D - 545 597 - -
Ahy17g0572 1775 Gene3D - 418 542 - -
Ahy17g0572 1775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 856 IPR027417 -
Ahy17g0572 1775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 955 1106 IPR001650 -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1646 1775 - -
Ahy17g0572 1775 Gene3D - 626 865 IPR038718 -
Ahy17g0572 1775 Coils Coil 1149 1169 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 122 155 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 396 417 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1650 1670 - -
Ahy17g0572 1775 SMART ultradead3 631 830 IPR014001 -
Ahy17g0572 1775 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1685 - -
Ahy17g0572 1775 SMART chromo_7 541 600 IPR000953 -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 82 96 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 370 395 - -
Ahy17g0572 1775 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 765 774 IPR002464 -
Ahy17g0572 1775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 859 1139 IPR027417 -
Ahy17g0572 1775 ProSiteProfiles Chromo and chromo shadow domain profile. 543 607 IPR000953 -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1226 1254 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1504 1525 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 224 254 - -
Ahy17g0572 1775 Coils Coil 1095 1115 - -
Ahy17g0572 1775 CDD SF2_C_SNF 941 1076 - -
Ahy17g0572 1775 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1685 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1718 1732 - -
Ahy17g0572 1775 Pfam Helicase conserved C-terminal domain 952 1065 IPR001650 -
Ahy17g0572 1775 Pfam Domain of unknown function (DUF4208) 1550 1642 IPR025260 -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 315 341 - -
Ahy17g0572 1775 CDD CD2_tandem 541 597 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 54 417 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1219 1257 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 272 298 - -
Ahy17g0572 1775 MobiDBLite consensus disorder prediction 1503 1525 - -
Ahy17g0572 1775 SMART DUF4208_2 1538 1643 IPR025260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0572 Ahy-Chr17 5531644 5547906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0572 657 1092 RAD5 or RAD16-like Gene Family AT1G02670 25.344 2.88e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy17g0572 SNF2_N 6.30E-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0572 K11367 - gmx:100808039 2842.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0572 17 5531644 5547906 Ahy17g0572 17 5531644 5547906 ECH
Ahy17g0572 17 5531644 5547906 Ahy7g0410 7 3531587 3546278 hybridization