Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0568 ATGTTAACCACAATCCTCAGAAGAACTTCTTCTTCTGCTATCACGAAGCGCTCTCTCGCCGCCGCCGTAACCTCCGCTACCGACCCCTTTCTCCCCCAACTCACCTCTTCCTCCGCATCCTCCGGAGATTCACCCGTCGGCGAGCTCCGACGATTCTCCGGGTTAACTGGGTTTTTGAAAGGGAGAGCCTTTCACTCTAATTCAGGGCCATTGAATTTCCGCTCCTCGTTCTGTTCTCGCGCGGAGTTTGCAGTTGAGGATTACGCCTACGAAGAAGGGTCTAGAGGGAACAGCGCCGATGAAGGTCTTGAGATCGCGAAGCTTGGGATTTCGCAGGATATTGTTTCTGCTCTTGCAAAGAAAGGAATCTTCAAGCTCTTTCCTATTCAGCGAGCTGTGCTGGAACCTGCTATGCAAGGACGTGATATGATTGGTCGAGCTAGAACAGGAACTGGAAAGACTCTTGCGTTTGGGATACCAATCATAGATAAGATCATTCAGTTCAATGCTAAGCATGGGCGAGGAAGGAATCCCTTGGCTTTGGTTTTGGCTCCTACCAGAGAGCTTGCACGACAGGTTGAGAAGGAATTCCAGGAAGCAGCACCTAACTTGGATACCATCTGTGTTTACGGGGGTACACCCATCTCTCGTCAGATGAGGCAGCTTGATTACGGTGTTGATATTGCTGTAGGCACGCCTGGCCGAATTATCGACCTTCTAAACAGAGGTGCCCTGAATTTACAGGAAGTTAAGTATGTTGTTATCGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAAGAAGATGTTGAAAAGATCTTGGAGAGGTTGCCCCCTAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCTTCTTGGATAAAGCAGATTACTCGTAACTACCTACAGGATCCCCTGACCATTGATCTTGTTGGAGAATCTGATCAGAAGTTGGCAGATGGAATTTCGCTATATTCTATTGCAACTGATATGTATGTTAAAGCAGGAATTCTCGGACCTCTAATAACAGAACATGCAAAAGGAGGAAAATGCATTGTTTTCACTCAAACCAAACGTGACGCCGATCGATTAACATATGGCTTGGCAAAAACTGTTCAATGTGAGGCCTTGCATGGAGACATATCCCAAGCTCAGAGGGAAAGAACTCTGGCTGGATTCAGAAATGGACATTTTAACGTTTTGGTTGCAACAGATGTTGCTTCACGTGGGCTTGATATACCAAATGTGGATCTTGTAATACACTTTGATCTTCCCAATTCATCGGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACTGAAGATCAATCCAGGGCTGTTAAGACCATTGAGCGTGATGTGGGATGTAGATTTTCAGAGCTACCAAGGATTGCTGTTGATCCTGGATCAGTGGACATGGGTGGTGGACGATTCGGTTCTTATGGAGGTGGAAGGGATCGTCGATCTGGTGATTCAGGTTTTGGTCGTAGTCCTGGATTTGGTCGTTCAGGCGGCTATGGAAACTCTGGGTTTGGCCGCTCTAGCTATGGAAATTCTGGGTCAACTTCTAGTCGTTTTGGTGACTCTGGTATGAGTCGACCCAGGGGGGGATTTTCAGGTGATTCATCTGGGGGATCAGGCTTTGGTCGGTTTGGCTCCTCTGATGGCTTTGGTTCAGGTCAATCGGGGAGTAGATCCGGAGGATTCAGTCGTCCAGGTGGTTTTGGTGGTTCAGATCGTTCAGGTGGTGGTGGTTTTGGGGGATTTGGTGGTTCAGATCGTTCAGGTGGTTTTGGATCTTTTGGCTCAAGTCAATCTAGTGCCTTTGGTGTTGCTGATCAGAACAATAAGGGAAGATTCTAA 1899 0.4708 MLTTILRRTSSSAITKRSLAAAVTSATDPFLPQLTSSSASSGDSPVGELRRFSGLTGFLKGRAFHSNSGPLNFRSSFCSRAEFAVEDYAYEEGSRGNSADEGLEIAKLGISQDIVSALAKKGIFKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRNPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLQEVKYVVIDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQITRNYLQDPLTIDLVGESDQKLADGISLYSIATDMYVKAGILGPLITEHAKGGKCIVFTQTKRDADRLTYGLAKTVQCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHFDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKTIERDVGCRFSELPRIAVDPGSVDMGGGRFGSYGGGRDRRSGDSGFGRSPGFGRSGGYGNSGFGRSSYGNSGSTSSRFGDSGMSRPRGGFSGDSSGGSGFGRFGSSDGFGSGQSGSRSGGFSRPGGFGGSDRSGGGGFGGFGGSDRSGGFGSFGSSQSSAFGVADQNNKGRF* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0568 632 Gene3D - 329 480 IPR027417 -
Ahy17g0568 632 CDD SF2_C_DEAD 334 451 - -
Ahy17g0568 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 462 IPR027417 -
Ahy17g0568 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 481 IPR001650 -
Ahy17g0568 632 MobiDBLite consensus disorder prediction 487 632 - -
Ahy17g0568 632 SMART ultradead3 122 325 IPR014001 -
Ahy17g0568 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 308 IPR014001 -
Ahy17g0568 632 SMART helicmild6 362 442 IPR001650 -
Ahy17g0568 632 MobiDBLite consensus disorder prediction 520 541 - -
Ahy17g0568 632 Gene3D - 104 312 IPR027417 -
Ahy17g0568 632 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 535 - -
Ahy17g0568 632 Pfam DEAD/DEAH box helicase 127 296 IPR011545 GO:0003676|GO:0005524
Ahy17g0568 632 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 53 535 - -
Ahy17g0568 632 MobiDBLite consensus disorder prediction 609 632 - -
Ahy17g0568 632 CDD DEADc 114 309 - -
Ahy17g0568 632 Pfam Helicase conserved C-terminal domain 340 442 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0568 Ahy-Chr17 5494721 5498520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0568 108 474 Eukaryotic Initiation Factors Gene Family AT3G19760 32.884 5.41e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0568 - - ahf:112702088 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0568 17 5494721 5498520 Ahy7g0407 7 3499646 3503456 hybridization