Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0563 ATGAAGCTTTCTTCCTCTGGGTTTAATCAACCAGCTGAAGAAGAAGGGGAGAAGAAAACTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTGGTTTCTCTACCACTGGTTGGAAGTCGTGTAGTATACTTTCCTCAAGGTCACAGCGAACAGGTAGCTGCTTCGACCAACAGGGAAGCAGATGCACATATTCCGAATTACCCTAACCTGCCGCCCCAGCTTATCTGTCAGCTCCACAACGTGACGATGCATGCTGATGCTGAAACAGATGAAGTATATGCTCAGATGACTCTGCAACCTCTAAATCCACAAGAACAAAAGGATGTGTATCTACTTCCGGCCGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAGACATTAACTGCTAGTGATACCAGCACTCACGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACACACAGCAGCCTCCTGCTCAAGAACTGATTGCTAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCAAAAAGGCATCTTCTTACTACTGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCTGTTCTTTTCATATGGAATGAAAAAAATCAATTACTTTTGGGTATACGGAGAGCAAATCGTCCGCAGACTGTCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTCCTCGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGTTTTACTATATTTTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCCTTGACCAAGTATGTAAAAGCAGTGTATCATACACGAGTTTCTGTTGGTATGCGGTTTAGGATGCTCTTCGAGACAGAAGAGTCAAGTGTCCGTCGATATATGGGTACTATAACAGGCATTAGTGATTTAGATTCAGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGTTGGGATGAGTCTACTGCAGGAGATAGGCAACCAAGAGTCTCCTTGTGGGAGATTGAGCCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGTCCTTGGCCATCTGGACTACCTTCTTTATACGGTCTCAAGGATGGTGGTGACATGGGCATTAATTCTCCTTTCATGTGGCTCCAAAGTGGGCTTGGGGATCAAGGAATGCAATCATTGAACTTCCAGGGGATTGGTGTTACACCGTGGATGCAACCGAGATTTGATGCTTCCATGCCAGGACTCCAACCGGAGTTATACCAAGCAATGACTTCTGCTGCATTCCAGGAAATGAGGACGATGGATCCTTCGAAACCTTCATCCCAATCTCTGTTGCAGTTTCAGCAGCCTTCAAATGTTCCTTCTGCTTTTGCATCTGAGTTACAGAGACAAGTGTTACCACAGTCTCAGCCCCAAAACACTCTTCTACAAAATTTTCAAGAACATCAAACTCCTGCACCGTCACAGATTTCACCACAGCAGTTGCATCGTTACCACCCATATAGCGATCAGCGGCAACAGCAGCAGCAACTAAAAACTGTGCCTGTTCAGCAGCAGTTACAGAATTTAGTCTCTCCGTTGTCTAATTTTGCATCAGCTACACAACCTCAATCTCCATCCTTGCAAGCCCTTGCTTCACATTGCCAGCAGCAGAGCTTTCCCGAGCCAATCAGGAATCATGTTTCAAGCTCTGATGTTTCCCCTATGCAAAGTCTACTAGGCTCATTCTCTCAGGATGGAGCATCACAGTTACTTAACCGGAACGGACCGAACTCTGTCATGTCTTCTGGAGCCTTACTACCGAAGCAAATAACCATTGAATCTCAGGTACCATCAGCTGGTGCTCAGTGTGTATTGCCTCAGGTGGAAAATTTGGGAACATCACAATCAAATGTGTCCGAACTTACCGCTTTGCCTCCGTTTCCTGGAAGAGAACATTCTGGATATCAAGGTGCAGCTGATCCTCATAGCAATCTTTTGTTTGGGATAAACATAGATCCTTCTTCTCTTATGCTGCAAAATGGCATGCAAAACCTTAGAAATCTAGGCAACGTGAACGATTCATTGTCAATGACGTTTTCTGCTCCAAATTGTGGTGGTGCTAATGCTCCTGGCTCCGATTTCCCCCTAAGTTCAAACGTAACAACTTCAAGTTGTGTTGATGAATCGGGATTCTTGCAGTCTTCCGAAAATGTAGACCAATCCAATACTCCAACTGGAACCTTTGTCAAGGTTCACAAGTCAAGGTCCTTAGGCAGGTCACTGGACATTTCGAAGTTCAGCAGCTATGACGAGCTGCGCAGTGAACTTGCTCGGTTATTTGGCCTTGAAGGCCAACTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACATTCTCCTTCTTGGTGATGATCCCTGGCAGGAGTTTGTGAACAGTGTATGGTCCATTAAGATACTATCTCCACTTGAAGTTCAACAAATGGGGAAAGGTGTTGTTCCTTCTACTTCTGCCCCTTCAGCTCAAAAGCTTTCTTCTACTGCTACTACCAATTCTTGTGACAATAATTATGGTGTTGGTAAACAAGAGTTGAGAAGTTCCAGCAATGGTATGGCATCAATGGGGTCCCTTCACTATTAG 2709 0.4522 MKLSSSGFNQPAEEEGEKKTLNSELWHACAGPLVSLPLVGSRVVYFPQGHSEQVAASTNREADAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGGDMGINSPFMWLQSGLGDQGMQSLNFQGIGVTPWMQPRFDASMPGLQPELYQAMTSAAFQEMRTMDPSKPSSQSLLQFQQPSNVPSAFASELQRQVLPQSQPQNTLLQNFQEHQTPAPSQISPQQLHRYHPYSDQRQQQQQLKTVPVQQQLQNLVSPLSNFASATQPQSPSLQALASHCQQQSFPEPIRNHVSSSDVSPMQSLLGSFSQDGASQLLNRNGPNSVMSSGALLPKQITIESQVPSAGAQCVLPQVENLGTSQSNVSELTALPPFPGREHSGYQGAADPHSNLLFGINIDPSSLMLQNGMQNLRNLGNVNDSLSMTFSAPNCGGANAPGSDFPLSSNVTTSSCVDESGFLQSSENVDQSNTPTGTFVKVHKSRSLGRSLDISKFSSYDELRSELARLFGLEGQLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNSVWSIKILSPLEVQQMGKGVVPSTSAPSAQKLSSTATTNSCDNNYGVGKQELRSSSNGMASMGSLHY* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0563 902 Gene3D - 759 852 - -
Ahy17g0563 902 Pfam AUX/IAA family 753 845 IPR033389 -
Ahy17g0563 902 CDD B3_DNA 128 229 IPR003340 GO:0003677
Ahy17g0563 902 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy17g0563 902 PANTHER AUXIN RESPONSE FACTOR 6 1 872 - -
Ahy17g0563 902 Gene3D - 127 230 IPR015300 -
Ahy17g0563 902 ProSiteProfiles PB1 domain profile. 763 847 IPR000270 GO:0005515
Ahy17g0563 902 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Ahy17g0563 902 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Ahy17g0563 902 SUPERFAMILY CAD & PB1 domains 754 841 - -
Ahy17g0563 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 872 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy17g0563 902 Gene3D - 293 365 - -
Ahy17g0563 902 MobiDBLite consensus disorder prediction 854 902 - -
Ahy17g0563 902 SMART B3_2 129 231 IPR003340 GO:0003677
Ahy17g0563 902 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0563 Ahy-Chr17 5451623 5460843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0563 98 852 B3 DNA Binding Superfamily AT5G37020 54.534 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy17g0563 AUX_IAA 1.20E-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0563 - - gmx:100810798 1559.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0563 17 5451623 5460843 Ahy17g0563 17 5451623 5460843 ECH
Ahy17g0563 17 5451623 5460843 Ahy7g0401 7 3453947 3459947 hybridization