Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0537 ATGGATGTGGCTAAGTTGTACATGAACAACGACTACTCCGAAGAACATGAACATGAACATGAAGATGAAGATCATGAGATGATGAAAGAGGAGAAAGAAGTTGTGCTTCCTGGGTTTAGATTCCACCCAACAGATGAAGAGCTTGTTGGGTTTTATCTTCGGAGGAAGGTTGAGAAGAAGCCTCTTAAGATTGAACTTATCAAACATGTTGATATCTACAAATATGATCCATGGGATCTTCCAATTGGTTCATCAATGGGGGAGAAGGAATGGTATTTCTTTTGCATAAGAGGGAGAAAGTACAGGAACAGCATAAGGCCTAATAGGGTTACAGGATCAGGGTTTTGGAAAGCCACAGGGATTGATAAACCTATATACAGTGCTAATTATAATTATAATAATAATAATAGTAATAATAATAATAATAATAATAATAGTAAGGAGCATGGTGATCATCATGAATGCATTGGACTGAAGAAATCATTGGTTTATTACCGGGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCACCCAATAATAATAATGGAGCAAAATTATTAAGCAATAATCAAGAAGCTAATAATGCTACCAAGGATCTTCATGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAAAGGATTCCAACATACAAAAAGTACACACCAAATTTGAAAGATTCATCAACATCACCACTGATGAACAAACCCATCAATAACATTAACCACCAAACTGATTCCTCAGTAACTTCCATATCATGCAGCTTAGAATCTGACAACAACAATAGCAAGCCATTCTTGACTTTCACTAACACTATGACTATGGGCATTCAACAATGTGAAAGGAAGCCTCTTGTTATTGGACATGTTGATGAAAGGAACAACAACTTTTTCTTAGACCATTCATCAATACATCATCAACAAGCTCCAACAACAATTACTACTACTGCTTTGTCATCATCATCATACTCATCATGGAACCAGCACCATCTTGTGGAGGATTACTTGTTTGCAAATGAGAATTGGGATGATCTTAGATCTGTGGTTGAGTTTGCCACTGACCCTAATAATTCCAAGGTTTATCTATGA 1113 0.3684 MDVAKLYMNNDYSEEHEHEHEDEDHEMMKEEKEVVLPGFRFHPTDEELVGFYLRRKVEKKPLKIELIKHVDIYKYDPWDLPIGSSMGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSANYNYNNNNSNNNNNNNNSKEHGDHHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNNNNGAKLLSNNQEANNATKDLHEAEVWTLCRIFKRIPTYKKYTPNLKDSSTSPLMNKPINNINHQTDSSVTSISCSLESDNNNSKPFLTFTNTMTMGIQQCERKPLVIGHVDERNNNFFLDHSSIHHQQAPTTITTTALSSSSYSSWNQHHLVEDYLFANENWDDLRSVVEFATDPNNSKVYL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0537 370 ProSiteProfiles NAC domain profile. 35 222 IPR003441 GO:0003677|GO:0006355
Ahy17g0537 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 152 364 - -
Ahy17g0537 370 Coils Coil 13 33 - -
Ahy17g0537 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 130 - -
Ahy17g0537 370 Pfam No apical meristem (NAM) protein 37 184 IPR003441 GO:0003677|GO:0006355
Ahy17g0537 370 PANTHER - 152 364 - -
Ahy17g0537 370 MobiDBLite consensus disorder prediction 1 26 - -
Ahy17g0537 370 Gene3D NAC domain 44 225 IPR036093 GO:0003677|GO:0006355
Ahy17g0537 370 MobiDBLite consensus disorder prediction 132 152 - -
Ahy17g0537 370 SUPERFAMILY NAC domain 32 221 IPR036093 GO:0003677|GO:0006355
Ahy17g0537 370 MobiDBLite consensus disorder prediction 9 26 - -
Ahy17g0537 370 PANTHER - 20 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0537 Ahy-Chr17 5194978 5198781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0537 21 222 NAC Transcription Factor Family AT5G39820 56.604 7.75e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy17g0537 NAM 1.10E-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0537 - - ahf:112767137 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0537 17 5194978 5198781 Ahy17g0537 17 5194978 5198781 ECH
Ahy17g0537 17 5194978 5198781 Ahy7g0377 7 3197676 3201192 hybridization