Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0529 ATGTGGCCGCCTCCTCCGGTCTCGGACCTCGCACCGCCACCAGCCTCCAACCCTTGCCACTTTGCGTCTTTGTGCGACCTCTGTGGCTCTGTCAAGTCCCAATTTTTTGTGCTCATTGTTTTGTATGAGACATTCCGAATGCATTCGTCAAAGTTTAGCTCTAGTGGCTCTCGTGACCTCCTTATCTGTGATGAGGCTCACAGACTAAAGAATGATCAGACGATAACAAACAGGGCATTGGCAGCTCTTCCATGTAAACGTAGAATTCTATTTTCAGGAACTCCTTTGCAGAATGACTTGGAGGAATTCTGTGGAAGTTGA 321 0.4798 MWPPPPVSDLAPPPASNPCHFASLCDLCGSVKSQFFVLIVLYETFRMHSSKFSSSGSRDLLICDEAHRLKNDQTITNRALAALPCKRRILFSGTPLQNDLEEFCGS* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0529 106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 104 IPR027417 -
Ahy17g0529 106 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 21 106 IPR014001 -
Ahy17g0529 106 Gene3D - 20 105 IPR038718 -
Ahy17g0529 106 Pfam SNF2-related domain 31 104 IPR000330 GO:0005524|GO:0140658
Ahy17g0529 106 PANTHER SNF2/RAD54 FAMILY MEMBER 34 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0529 Ahy-Chr17 5134174 5135976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0529 40 103 RAD5 or RAD16-like Gene Family AT5G22750 35.135 6.98e-08 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy17g0529 SNF2_N 5.90E-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0529 K10875 - aip:110271387 214.157