Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0485 ATGGAACTTCCAAATCAAGCACCGGAAGAAGGATCCTCACAACATCAGAAGAAGATGGGGAGAGGCAAGATTGAGATCAAGAGGATTGAAAACACTACCAACCGCCAAGTCACGTTCTGTAAGCGCCGCAACGGCTTGCTCAAGAAAGCTTATGAGCTCTCCGTCCTCTGTGACGCCGAGGTGGCCCTCGTCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAATTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGAGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCACAGCAGCAACAACAACAGGAACAAGAACAGCAAAATTTGATGCATGGGAACATGTGTGAAGATCAGTCCACCATAGCGTCACAAACATATGACAGGAATTTCTTCCCAATAAATCTCTTAGATTCCAATAATCATCAATATTCACGCCAAGATCACACTGCACTCCAGCTTGTCTGA 762 0.4383 MELPNQAPEEGSSQHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKASAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQEQEQQNLMHGNMCEDQSTIASQTYDRNFFPINLLDSNNHQYSRQDHTALQLV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0485 253 Gene3D - 31 130 IPR036879 GO:0003677|GO:0046983
Ahy17g0485 253 MobiDBLite consensus disorder prediction 1 25 - -
Ahy17g0485 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 13 244 - -
Ahy17g0485 253 SUPERFAMILY SRF-like 20 97 IPR036879 GO:0003677|GO:0046983
Ahy17g0485 253 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g0485 253 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 Coils Coil 139 159 - -
Ahy17g0485 253 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 Coils Coil 178 207 - -
Ahy17g0485 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 244 - -
Ahy17g0485 253 Coils Coil 108 128 - -
Ahy17g0485 253 CDD MADS_MEF2_like 20 96 IPR033896 GO:0000977|GO:0045944
Ahy17g0485 253 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Ahy17g0485 253 Pfam K-box region 103 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0485 Ahy-Chr17 4683982 4688911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0485 9 253 MADS-box Gene Family AT3G58780 68.651 1.29e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy17g0485 K-box 7.80E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0485 K09264 - gmx:100792224 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0485 17 4683982 4688911 Ahy7g0340 7 2772391 2778848 hybridization
Ahy17g0485 17 4683982 4688911 Ahy17g0485 17 4683982 4688911 PCT
Ahy17g0485 17 4683982 4688911 Ahy7g0340 7 2772391 2778848 PCT
Ahy7g0340 7 2772391 2778848 Ahy17g0485 17 4683982 4688911 PCT