Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0480 ATGGAAGTTGACAATTCTAACGTTTCGAAAGCTGAAGAATTCAAGCGCTCTGCGAATGAAGCATTCAATGCTCACAGATTTACTCAAGCTATTGAACTATATACGCAAGCAATTGAACTAAACGATAAAAATGCGGTTTACTATGCTAATCGTGCCTTTGCGCATCTTCGGCTTGAGGAATACGGTAGTGCCATACAAGATGCTACAAGGGCAATTGAAGTTGATCCTAAATACTCAAAGGGGTATTATAGGCGAGGTGCAGCTCATCTTGCTATGGGAAAATTCAAGGAGGCTCTAAAAGATTTTCAGCAGGTCAAGAAAATGTGCCCAAATGACACTGATGCATCAAAGAAATTGAAGGAGTGTGAAAAAGCCGTTATGAAACTTAAATTTGAAGAAGCAATTGCTGTGCCAGAGCATCAAAGACGTCCAATAGCCGACTCCATAGATTTCCATTCTATAGATGTGGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGATGATTTCAAGAATCAAAAGTGCTTACACAAACGTTATGCATTCCAGATTGTATTGCAAACCAGAGAAATGTTGAAAGCTTTGCCTTCTCTTGTGGATATAAATGTTCCCGATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGCCAGTACTATGATCTCTTGAATATTTTTGAGCTCAACGGGCTTCCCTCTGAAGAGAATCCATACCTATTTAACGGTGACTTTGTTGATAGAGGATCATTTTCTGTGGAGGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTGTCCTTCAGGCATGTATCTAGCTAGAGGAAATCATGAGAGTAAGAACATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCAAAGTTGAATGAAACATTCGTGGAACTGTTTTCAGAAGTATTTTGCTGTTTACCCTTGGCTCATTTGATAAATGAGAAAATTTTCATAGTTCATGGAGGTCTATTTAGTGTGGATGGGGTCAAACTGTCTGATATCCGAGCAATTGACCGATTCTGTGAGCCTCCAGAAGAAGGACTGATGTGTGAATTGCTTTGGAGTGATCCGCAACCACTCCCTGGAAGAGGTCCAAGCAAGAGGGGCGTAGGTCTCTCTTTCGGTGCGGATGTCACGAAAAGGTTTTTGCAAGATAATAACTTAGATTTAGTTGTACGATCTCATGAAGTAAAGGATGAGGGCTACGAGATTGATCATGATGGTAAACTCATAACTGTTTTCTCTGCTCCAAATTACTGTGACCAGATGGGGAACAAAGGTGCCTTTATTAAGTTTGAAGCACCTGCTTTGAAGCCTAACATTGTTACATTCTCAGCAGTGCCACACCCTGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTCAGGTTATTTTCATAG 1449 0.4065 MEVDNSNVSKAEEFKRSANEAFNAHRFTQAIELYTQAIELNDKNAVYYANRAFAHLRLEEYGSAIQDATRAIEVDPKYSKGYYRRGAAHLAMGKFKEALKDFQQVKKMCPNDTDASKKLKECEKAVMKLKFEEAIAVPEHQRRPIADSIDFHSIDVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLKALPSLVDINVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSGMYLARGNHESKNMNKIYGFEGEVRSKLNETFVELFSEVFCCLPLAHLINEKIFIVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNNLDLVVRSHEVKDEGYEIDHDGKLITVFSAPNYCDQMGNKGAFIKFEAPALKPNIVTFSAVPHPDVKPMAYANNFLRLFS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0480 482 Pfam Calcineurin-like phosphoesterase 220 414 IPR004843 GO:0016787
Ahy17g0480 482 CDD MPP_PP5_C 160 475 IPR041753 -
Ahy17g0480 482 Gene3D Tetratricopeptide repeat domain 1 138 IPR011990 GO:0005515
Ahy17g0480 482 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Ahy17g0480 482 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Ahy17g0480 482 SMART pp2a_7 188 464 IPR006186 GO:0016787
Ahy17g0480 482 PANTHER BNAC09G39960D PROTEIN 10 481 - -
Ahy17g0480 482 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Ahy17g0480 482 Gene3D - 139 481 IPR029052 -
Ahy17g0480 482 PIRSF PPPtase_5 1 482 - -
Ahy17g0480 482 Pfam Tetratricopeptide repeat 18 78 - -
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 283 307 IPR006186 GO:0016787
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 220 247 IPR006186 GO:0016787
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 403 423 IPR006186 GO:0016787
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 425 441 IPR006186 GO:0016787
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 250 277 IPR006186 GO:0016787
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 347 374 IPR006186 GO:0016787
Ahy17g0480 482 PRINTS Serine/threonine phosphatase family signature 317 343 IPR006186 GO:0016787
Ahy17g0480 482 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 10 481 - -
Ahy17g0480 482 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Ahy17g0480 482 SUPERFAMILY Metallo-dependent phosphatases 168 476 IPR029052 -
Ahy17g0480 482 SMART tpr_5 45 78 IPR019734 GO:0005515
Ahy17g0480 482 SMART tpr_5 11 44 IPR019734 GO:0005515
Ahy17g0480 482 SMART tpr_5 79 112 IPR019734 GO:0005515
Ahy17g0480 482 Pfam PPP5 TPR repeat region 119 212 IPR013235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0480 Ahy-Chr17 4599971 4604861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0480 195 407 Calmodulin-binding Proteins AT5G63870 33.468 2.71e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0480 K04460 - sly:543849 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0480 17 4599971 4604861 Ahy17g0480 17 4599971 4604861 ECH
Ahy17g0480 17 4599971 4604861 Ahy7g0335 7 2704506 2709404 hybridization