Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0401 ATGGTGGCAACAAGGTGCAAGGAGGTTTTCTTTGGAATATTCATGGCAGCCATGGAGACACTTCTTTATGCTGCATTCACTCTTATTCTAGCACTAGGAGGTTCAATAGTAGGAACAATAGCAGGAGGAATCAAAGGGCAAACAACAGAAGCTGGTTTTCTTGATGGAGCTGGCAAAGGAGCAGTTACAGGAGCCATTGCTGCCATTGAATTGCTGAACTCTAGAGCCATTGATGACCCTTTAACCAAGGCACTGATGAGCAGTTTATTAAATGGGAAAATCTTTATGGAATGGATATGTCCAGCTGTTGCTCAAGCCTATCACTTGCATATGAACACAGCAGAAACAAGTTCACAGAGAGAAGTATCATCAAATATTTATGAAAACAAAGGGGTTACAGGGATGGCACAGAGTGTAATTCTGAATCTTCCATTTCAGAAATTTAAATCCAAGAAACTAATGTACATGTCAAGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGAAGAATTGATTAGGATACTTCCAAAATGTGGCCACATTTTTCATTTACAATGTATAGACAAATGGTTAATCCAACAAGGATCATGCCCTATGTGTAGAACTCATGTTTCTTCTTATCACATTCATCACTTGTAG 639 0.3928 MVATRCKEVFFGIFMAAMETLLYAAFTLILALGGSIVGTIAGGIKGQTTEAGFLDGAGKGAVTGAIAAIELLNSRAIDDPLTKALMSSLLNGKIFMEWICPAVAQAYHLHMNTAETSSQREVSSNIYENKGVTGMAQSVILNLPFQKFKSKKLMYMSSCSICFQDFEDEELIRILPKCGHIFHLQCIDKWLIQQGSCPMCRTHVSSYHIHHL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0401 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 207 IPR013083 -
Ahy17g0401 212 SUPERFAMILY RING/U-box 158 207 - -
Ahy17g0401 212 Pfam Ring finger domain 158 201 IPR001841 -
Ahy17g0401 212 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 204 IPR044523 -
Ahy17g0401 212 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Ahy17g0401 212 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 204 - -
Ahy17g0401 212 CDD RING-H2_PA-TM-RING 159 201 - -
Ahy17g0401 212 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0401 Ahy-Chr17 3885422 3889908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0401 2 204 C3H Transcription Factor Family AT5G66070 36.111 8.57e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0401 - K19041 gmx:100305612 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0401 17 3885422 3889908 Ahy17g0401 17 3885422 3889908 ECH
Ahy17g0401 17 3885422 3889908 Ahy7g0271 7 2170652 2174079 hybridization