Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0400 ATGGGTGGTTGTTTGAGTAAAAAAGGATCAGAACATGAATACAATGGTTACAGACATGGACATGAACCCTATGTGAACCAATCAAAGAACCCTCCTCCACCCCCACATCATCATCATCATCATCATCATCATCATCAACAACAACAACAACAACAACAACAACAACAACAACAACAGCGGCAACCTTACAATATACCTGAGAAACCTGCTGCACCTCAAGCCAATTGGAACAAGAACACTGTTCCTGTTCCAAGTCCAAAACCTGTTATCAGGTCAGATACAATTCTTGGGAAGCCATTAGAGGATGTTAGGCAATACTATACCCTTGGAAAAGAATTGGGGAGAGGCCAATTTGGTGTGACATATCTCTGCACTGAGAATTCAAGTGGCCTGCAATATGCTTGTAAATCGATCTCAAAGAGGAAGCTTGTTAGCAAATCTGATAAGGAGGATATAAAAAGGGAGATTCATATTATGCAGCATTTGAGTGGACAAGCAAACATTGTTGAATTCAAAGGTGCTTATGAGGACAAGCATTCAGTTCATGTTGTCATGGAGTTGTGTGCAGGTGGTGAGCTTTTTGATAGGATCATTGCAAAGGGACATTACAGTGAAAGAGCTGCAGCTTCAATATGCAGACAGATTGTGAATGTTGTTCATATTTGCCATTTCATGGGTGTGATGCATAGGGATCTTAAGCCAGAGAATTTCTTGTTGTCCAGTAAGGATGACAAGGCACTTCTCAAGGCCACGGATTTCGGCCTGTCGGTATTCATTGATGAAGGCAAGGTGTATCGTGATATAGTTGGGAGCGCTTATTATGTTGCCCCGGAAGTTCTACGTCGTAGATATGGAAAGGAAATAGATGTATGGAGTGCAGGAGTTATATTATATATCTTACTCAGTGGTGTGCCTCCATTCTGGGCAGAGATGGAAAAGGGAATATTTGATGCCATATTGGAAGGCCATATTGATTTCGAAACCGCCCCATGGCCAAGCATATCAAATAGTGCTAAGGACCTCGTTCGTAAGATGCTTACACAGGACCCAAAGAAACGCATCACTTCGGCTCAAGTTCTTGAGCACCCATGGATTAGAGAAGATGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAACTAAAGAAACTTGCACTCAAGGTCATAGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTAAAGTCAATGTTTACAAATATTGACACTGACAATAGCGGTTCAATCACATATGAGGAACTAAGGGCTGGATTGCAACGACTTGGATCGAAACTCACTGAAGCCGAAGTGCGGCAGTTGATGGATGCTGCTGATGTGGATGGAAACGGCACGATCGACTACATAGAATTCATCACTGCTACAATGCATAGACATAGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTAGAATCAGCCATGAAAGAATATGGCATGGGTGATGAAGCCACAATCAGGGAAATCATATCTGAAGTTGATACAGATAATGATGGAAGAATCAACTATGAAGAATTTTGTACAATGATGAGGAGTGGAACAACTCATCAAGGCAAACTATTCTAA 1668 0.4113 MGGCLSKKGSEHEYNGYRHGHEPYVNQSKNPPPPPHHHHHHHHHHQQQQQQQQQQQQQQRQPYNIPEKPAAPQANWNKNTVPVPSPKPVIRSDTILGKPLEDVRQYYTLGKELGRGQFGVTYLCTENSSGLQYACKSISKRKLVSKSDKEDIKREIHIMQHLSGQANIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLRRRYGKEIDVWSAGVILYILLSGVPPFWAEMEKGIFDAILEGHIDFETAPWPSISNSAKDLVRKMLTQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKSMFTNIDTDNSGSITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELESAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTTHQGKLF* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0400 555 CDD EFh 487 545 IPR002048 GO:0005509
Ahy17g0400 555 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Ahy17g0400 555 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 550 - -
Ahy17g0400 555 MobiDBLite consensus disorder prediction 1 92 - -
Ahy17g0400 555 Gene3D - 374 550 - -
Ahy17g0400 555 SMART serkin_6 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy17g0400 555 Pfam Protein kinase domain 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy17g0400 555 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Ahy17g0400 555 SMART efh_1 484 512 IPR002048 GO:0005509
Ahy17g0400 555 SMART efh_1 448 476 IPR002048 GO:0005509
Ahy17g0400 555 SMART efh_1 412 440 IPR002048 GO:0005509
Ahy17g0400 555 SMART efh_1 519 547 IPR002048 GO:0005509
Ahy17g0400 555 MobiDBLite consensus disorder prediction 33 47 - -
Ahy17g0400 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Ahy17g0400 555 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Ahy17g0400 555 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Ahy17g0400 555 Gene3D Phosphorylase Kinase; domain 1 109 192 - -
Ahy17g0400 555 CDD STKc_CAMK 107 364 - -
Ahy17g0400 555 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Ahy17g0400 555 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-LIKE 49 550 - -
Ahy17g0400 555 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Ahy17g0400 555 Gene3D Transferase(Phosphotransferase) domain 1 193 373 - -
Ahy17g0400 555 ProSiteProfiles Protein kinase domain profile. 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy17g0400 555 SUPERFAMILY Protein kinase-like (PK-like) 88 386 IPR011009 -
Ahy17g0400 555 ProSitePatterns EF-hand calcium-binding domain. 528 540 IPR018247 -
Ahy17g0400 555 MobiDBLite consensus disorder prediction 48 64 - -
Ahy17g0400 555 Coils Coil 430 450 - -
Ahy17g0400 555 SUPERFAMILY EF-hand 404 544 IPR011992 -
Ahy17g0400 555 Pfam EF-hand domain pair 483 545 IPR002048 GO:0005509
Ahy17g0400 555 Pfam EF-hand domain pair 413 473 IPR002048 GO:0005509
Ahy17g0400 555 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Ahy17g0400 555 CDD EFh_PI-PLC 413 546 - -
Ahy17g0400 555 ProSiteProfiles EF-hand calcium-binding domain profile. 516 550 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0400 Ahy-Chr17 3865498 3870198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0400 85 551 EF-hand Containing Proteins AT3G20410 82.227 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ahy17g0400 Pkinase 2.00E-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0400 K13412 - gmx:100794852 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0400 17 3865498 3870198 Ahy17g0400 17 3865498 3870198 ECH
Ahy17g0400 17 3865498 3870198 Ahy7g0270 7 2151557 2156208 hybridization