Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0397 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAAGAGGAGATTCAAGATTCCATTGATAAGTTGCAATCTTCTTATCACCAATGGGAAAGCACTTCTGACGGTGGGGATCGAACAAATCTCTCAAAGGAAGTTCTTACTGCTTGTGAGAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCGATTTCTGTTGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAGGTCGAGATTGAAAACCGGAGAAGGTGGACCAGCAGTGCTCGCACTCAGGTGCGCACAATGAAGAATTCAGTGGAAGCCGGAAAGGCCTCGAATGTGACGAACCATGCAAGTGTGAATGGGATGCGCAGGGAATTGATGAGGCTTCCTAATTCACATCAAGCTGATACATCCAACCAGTATACTGCCAACCATAATGATGATTTCATTGAATCAGAATCTGACAGACAGATGCTTCTTATGAAAAAACAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGACTTACGATACATGAAGAACTCCTTGCACAGGAAAAGATTATAGATGAACTGGGTAATGAGATGGACAGTACATCCAATCGTCTAGATTTCGTACAAAAAAAAGTGGCAATGGTGATGAAGAAAGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGCTGGCACTGTTTATTTTCCTATTCATCTTGGTGTTCTTCACCTAA 741 0.4251 MPSAQDPFYVVKEEIQDSIDKLQSSYHQWESTSDGGDRTNLSKEVLTACESIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTSSARTQVRTMKNSVEAGKASNVTNHASVNGMRRELMRLPNSHQADTSNQYTANHNDDFIESESDRQMLLMKKQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0397 246 Pfam SNARE domain 191 242 IPR000727 -
Ahy17g0397 246 Gene3D - 2 104 - -
Ahy17g0397 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Ahy17g0397 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Ahy17g0397 246 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Ahy17g0397 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Ahy17g0397 246 Coils Coil 12 32 - -
Ahy17g0397 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Ahy17g0397 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Ahy17g0397 246 Gene3D - 161 225 - -
Ahy17g0397 246 Coils Coil 192 212 - -
Ahy17g0397 246 SMART tSNARE_6 149 216 IPR000727 -
Ahy17g0397 246 CDD SNARE_Qc 157 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0397 Ahy-Chr17 3832166 3835102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0397 55 246 SNARE and Associated Proteins AT1G28490 70.312 1.48e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0397 K08500 - gmx:100793612 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0397 17 3832166 3835102 Ahy7g0267 7 2109868 2112818 hybridization
Ahy17g0397 17 3832166 3835102 Ahy17g0397 17 3832166 3835102 PCT
Ahy17g0397 17 3832166 3835102 Ahy7g0267 7 2109868 2112818 PCT
Ahy7g0267 7 2109868 2112818 Ahy17g0397 17 3832166 3835102 PCT