Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0390 ATGATTTCTGAAAGATGTGCTGCTTGCAAGAATCAAAGAAGAAAATGCCCTTCTGATTGCATTTTCTCTCCATGTTTTCCTGCCAATGATCCTCAAAAGTTTGCTTGTGTTCACAAAATCTACGGTGGCAGTAATGTTGGAAAGATGCTTCAGGGAATTCCAACCTATCTAAGAGAACAAGCTGCAAATGCATTGTATTTAAAAGCAAAATGGAGGATTCATGACCCTGTTTATGGGTGTGTTGGCATTATCTCTTCATTGTATGAACAAATTCAAAATGCAGAAATTGAACTAGCAAAAATTCAAACTCAGATTACTTTCTACAAGCTCCAAACCCAACGTGTTGAAGCTGAACCAAATTCGGAAGTTTTGCAAGCACAAAGCAGCAATATGGAGCAGTTTGAGTGGGACAATCCAACTATAGCTTCTTGGTTCAATTGA 441 0.381 MISERCAACKNQRRKCPSDCIFSPCFPANDPQKFACVHKIYGGSNVGKMLQGIPTYLREQAANALYLKAKWRIHDPVYGCVGIISSLYEQIQNAEIELAKIQTQITFYKLQTQRVEAEPNSEVLQAQSSNMEQFEWDNPTIASWFN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0390 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 118 - -
Ahy17g0390 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Ahy17g0390 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Ahy17g0390 146 Coils Coil 84 111 - -
Ahy17g0390 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0390 Ahy-Chr17 3763724 3764909 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0390 1 105 AS2 family AT3G26660 60.952 1.61e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy17g0390 LOB 6.50E-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0390 - - gmx:100790640 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0390 17 3763724 3764909 Ahy7g0261 7 2040543 2042287 hybridization