Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0244 ATGGCGATGATTTCTTCTCTCTCTGCGGCACTACTTCCTCCTCTTTCTCTCTCTACCTCTTCCTCCTCGCTCTCTTCCAACCCAAAGTTTGCGTCTTTGTGCTTTCAATCTGGTAACACCTTCAAGCTCAGAACCCCTAAGCTGCTTCACTCATCAACTAGGGTTTATGCCGCGCCTGAAGTTTTGGATTCTGAGGAACCGCTAGACGTACCTCCAGAAACCCTTGGCGATGATGAATCTGAGGCGACCACCTTTCAGGTTGGAGATTCAGACACTCGTACCACTTCCTCAATTAGCATTGGTGGTGATCCAGATATGATGGCGCCTAAGCAGAAGATTAGAATCAAACTTAGGTCTTACTGGGTGCCCTTGATAGAGGATTCTTGCAAGCAGATACTAGATGCAGCAAGGAATACCAATGCAAAAACCATGGGTCCTGTACCATTGCCAACGAAGAAGAGAATTTATTGTGTTCTTAAATCGCCACATGTACATAAGGATGCTCGATTCCATTTTGAGATCAGAACACATCAGCGTCTCATTGATATTTTGTATCCTACAGCACAAACAATAGATTCTCTGATGCAGCTTGATCTTCCTGCTGGTGTGGATGTAGAGGTCAAGCTCTGA 630 0.454 MAMISSLSAALLPPLSLSTSSSSLSSNPKFASLCFQSGNTFKLRTPKLLHSSTRVYAAPEVLDSEEPLDVPPETLGDDESEATTFQVGDSDTRTTSSISIGGDPDMMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0244 209 ProSitePatterns Ribosomal protein S10 signature. 136 151 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 Gene3D Ribosomal protein S10 domain 103 209 IPR036838 -
Ahy17g0244 209 Hamap 30S ribosomal protein S10 [rpsJ]. 110 209 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 Pfam Ribosomal protein S10p/S20e 114 208 IPR027486 -
Ahy17g0244 209 TIGRFAM rpsJ_bact: ribosomal protein uS10 111 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 PANTHER BNAC05G40270D PROTEIN 4 209 - -
Ahy17g0244 209 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 4 209 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 SMART Ribosomal_S10_2 114 208 IPR027486 -
Ahy17g0244 209 MobiDBLite consensus disorder prediction 62 103 - -
Ahy17g0244 209 MobiDBLite consensus disorder prediction 79 101 - -
Ahy17g0244 209 PRINTS Ribosomal protein S10 family signature 147 162 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 PRINTS Ribosomal protein S10 family signature 112 125 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 PRINTS Ribosomal protein S10 family signature 168 182 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy17g0244 209 SUPERFAMILY Ribosomal protein S10 112 209 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0244 Ahy-Chr17 2312210 2314656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0244 111 209 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 7.35e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0244 K02946 - gmx:100526953 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0244 17 2312210 2314656 Ahy17g0244 17 2312210 2314656 ECH
Ahy17g0244 17 2312210 2314656 Ahy7g0140 7 996761 998839 hybridization