Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0133 ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACCGTAGTTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCGCCGCCGCCGCCGCAAGTGGAGCAGACAGTGAAAATGAGGAAGAAGCAAGTGATGAACGCATGGATGATGCCGGTGGTGCCGTCGATGAAGTTGCGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTTCCTGGAACAAAGCGTGCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACACGGACAAGGTTCAAGCAGTTGCTTGGCATCATCATGAACAAGAAATTCTTCTTAGTGGTTCGTTTGATCATACTGTGGTCCTGAGGGATGTAAGGATGTCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACTATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACAGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGCGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1458 0.4438 MISAISWIPIGASKAEPTVVEPPSKEEIQDIITAAAAASGADSENEEEASDERMDDAGGAVDEVARALNVADALGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLSWNKACRNVLASASADKRVKIWDVATGKCESTMEHHTDKVQAVAWHHHEQEILLSGSFDHTVVLRDVRMSSHPGYKWSVTADVESLAWDPHTNHYFVVSLEDGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNASAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0133 485 Pfam Anaphase-promoting complex subunit 4 WD40 domain 248 306 IPR024977 -
Ahy17g0133 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 291 IPR001680 GO:0005515
Ahy17g0133 485 Gene3D - 90 335 IPR015943 GO:0005515
Ahy17g0133 485 SUPERFAMILY WD40 repeat-like 200 470 IPR036322 GO:0005515
Ahy17g0133 485 ProSitePatterns Trp-Asp (WD) repeats signature. 406 420 IPR019775 -
Ahy17g0133 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 424 - -
Ahy17g0133 485 SMART WD40_4 240 282 IPR001680 GO:0005515
Ahy17g0133 485 SMART WD40_4 329 368 IPR001680 GO:0005515
Ahy17g0133 485 SMART WD40_4 285 325 IPR001680 GO:0005515
Ahy17g0133 485 SMART WD40_4 379 419 IPR001680 GO:0005515
Ahy17g0133 485 SMART WD40_4 178 217 IPR001680 GO:0005515
Ahy17g0133 485 SMART WD40_4 424 464 IPR001680 GO:0005515
Ahy17g0133 485 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 477 - -
Ahy17g0133 485 MobiDBLite consensus disorder prediction 36 58 - -
Ahy17g0133 485 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Ahy17g0133 485 Gene3D - 336 481 IPR015943 GO:0005515
Ahy17g0133 485 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 477 IPR044285 GO:0006364
Ahy17g0133 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 428 IPR001680 GO:0005515
Ahy17g0133 485 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Ahy17g0133 485 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
Ahy17g0133 485 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Ahy17g0133 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 473 IPR001680 GO:0005515
Ahy17g0133 485 Pfam WD domain, G-beta repeat 383 419 IPR001680 GO:0005515
Ahy17g0133 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0133 Ahy-Chr17 1504728 1508425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0133 266 464 U-box Gene Family AT2G33340 31.280 3.26e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0133 K14791 - gmx:100807947 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0133 17 1504728 1508425 Ahy7g0013 7 95514 100535 hybridization