Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy17g0096 | ATGGCCCACTCCAAGGCACTTCCGTGCGACTCCGACGGTGCCTGCATGCTCTGCAAGCAGAAACCACCACCGCACGAGTGCCTCACGTGCCGGACCTGCCATACCCCGTGGCACCAGCCATGTCTCCCCGCCGGCACCGGCCCTCCTACCATGGCCGAGGTCAGCACTTGGGAGTGCCCTGACTGTGCCGATCCTGCCCCTGTTCAAGCATCGGCTCCCGCCGTTGCCGGAAACTCCGACAGCTTAGTGGCGGCGATCCGGGCGATTCAGGGAGACACCTCACTCACTGACGAGGAGAAGGCAAAGAAGAGACAGGAGCTCGTTTCTCGCTCCTCGAAGCCACTCGCAGCAGCGGAGAATGGCAAAGCAGAGAAGGACATCTTCGATGGGAGTCTGAACTGCTCAATCTGCATGCAGTTGCCGGAGAGACCCGTCACGACGCCGTGTGGTCACAACTTTTGTTTGAAGTGCTTCCAGAAGTGGATTGGGCAGGCAAAGCGGACCTGTGCGAACTGTCGCAGTCAGATCCCACCTAAGATGGCCGAAAACCCTCGGATTAATGACCAGCTGGCCATTGCGATCCGTTTGGCGAGGCAAATGAAGGCCACGGGGATGGTGGGTGCGGTGGCGCAGCCCAAGGTGTATGTTTCTCGAAAAAACGACGAGCTTCCAGACACTTGCTTCACCACTGAGCGGGCGAAGAAGACCGGAAAGGCCAACGCGTGCAGTGGTAAGATTTTTGTGACGATTCCTTCGGATTTTTTGGGTCCAATCACTGCTGAGTATGATCCCAGGAACAATCGTGGGGTTCTTGTTGGGGATACTTGGGAGGACAGAATGGATTGCAGGCAGTGGGGCGCCCATTTCCCTCATGTTGCGGGCATTGCTGGTCAAAAGGGTTTTGGTGCTCAGTCTGTAGCTCTTTCAGGTGGCTATGTTGATGACGAGGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGTGGAAAGGACCTTAGTGGCAACAAACGCACCAACAAAACACATTCATTTGACCAGAAGTTTGACAACATGAATGAGGCCCTCAGAGTGAGTTGCCAACAAGGTTATCCTGTTAGGGTTGTGAGGTCCCACAAGGAAAAACGATCTGCTTATGCACCCCAATTTGGAGTGAGGTATGATGGAGTTTATCGAATAGAGAAATGCTGGCGTAAGAAGGGAATACAAGGTTGCTTGGTTTGCAGATATTTGTTTGTTAGATGTGACAATGAACCAGCTCCATGGACAAGTGATGAACATGGAGACCGTCCACGCCCACTTCCAGTGGTTAAAGAGTTGAAGGGGGCAATTGATGTAACTGAAAGGAAGAAAGCTGCAGCATGGGATTATGATGAGGAAAAGGAATGCTGGATGTGGAAGAGACCCCCACCACCAAGCAAGAAAATGGATGCTATAAGGTGTGAAAATGGGATATCAGAAAAGATAAAAATTGTACGAAAAGTCAAGACCAAGCCAGTGAGAGATAGGCTTATGAAAGAGTTTGCTTGCCTCTTGTGTCGCAAGGTGTTGAGCGTCCCTGTGACAACTCCTTGTGGCCACAACTTCTGCAAATCCTGTTTGGAGGGTGCCTTTTCTGGCAAAAGCTTTATCAGAAAGAGGGGAAGCGAAGGTGGGCGCACCTTGCGAGCACAGAAGAATGTTATGAAATGCCCTTCATGTTCAATTGACATAGCTGAATTTCTTCAGAACCCAGAGGTTAACAGACACATGATGAGTGCGATAGAAGCCCTCCTCCGCGAGGCTGAGATGGAAGAGAGTTCTGAAGTGTCCAATGACAAAAATGATGAAAATATAGAGACTGTGAATGATGATGATGGTACAGAAGTTTCAAAGCCTTGTGATTCAGGTGAGAATGTCCTAGAGGAGATCAAGGACAATGATTTGAATCAGCCACACAAGCGCAGAAAGGGTGCTGGTGATTCAGCTATTGTGAACACTGAGGAGCAAATCAATGTGGCAGGACTAGAGGACAATGTAATGACTTGCAGCACTTAA | 2034 | 0.5064 | MAHSKALPCDSDGACMLCKQKPPPHECLTCRTCHTPWHQPCLPAGTGPPTMAEVSTWECPDCADPAPVQASAPAVAGNSDSLVAAIRAIQGDTSLTDEEKAKKRQELVSRSSKPLAAAENGKAEKDIFDGSLNCSICMQLPERPVTTPCGHNFCLKCFQKWIGQAKRTCANCRSQIPPKMAENPRINDQLAIAIRLARQMKATGMVGAVAQPKVYVSRKNDELPDTCFTTERAKKTGKANACSGKIFVTIPSDFLGPITAEYDPRNNRGVLVGDTWEDRMDCRQWGAHFPHVAGIAGQKGFGAQSVALSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKTHSFDQKFDNMNEALRVSCQQGYPVRVVRSHKEKRSAYAPQFGVRYDGVYRIEKCWRKKGIQGCLVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVVKELKGAIDVTERKKAAAWDYDEEKECWMWKRPPPPSKKMDAIRCENGISEKIKIVRKVKTKPVRDRLMKEFACLLCRKVLSVPVTTPCGHNFCKSCLEGAFSGKSFIRKRGSEGGRTLRAQKNVMKCPSCSIDIAEFLQNPEVNRHMMSAIEALLREAEMEESSEVSNDKNDENIETVNDDDGTEVSKPCDSGENVLEEIKDNDLNQPHKRRKGAGDSAIVNTEEQINVAGLEDNVMTCST* | 678 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy17g0096 | 677 | Pfam | Zinc finger, C3HC4 type (RING finger) | 132 | 176 | - | - | |
| Ahy17g0096 | 677 | SUPERFAMILY | PUA domain-like | 239 | 433 | IPR015947 | - | |
| Ahy17g0096 | 677 | MobiDBLite | consensus disorder prediction | 597 | 629 | - | - | |
| Ahy17g0096 | 677 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 1 | 655 | IPR045134 | - | |
| Ahy17g0096 | 677 | SUPERFAMILY | RING/U-box | 502 | 593 | - | - | |
| Ahy17g0096 | 677 | ProSiteProfiles | Zinc finger RING-type profile. | 509 | 567 | IPR001841 | - | |
| Ahy17g0096 | 677 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 1 | 655 | - | - | |
| Ahy17g0096 | 677 | SUPERFAMILY | FYVE/PHD zinc finger | 7 | 65 | IPR011011 | - | |
| Ahy17g0096 | 677 | ProSiteProfiles | Zinc finger RING-type profile. | 134 | 173 | IPR001841 | - | |
| Ahy17g0096 | 677 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 81 | IPR013083 | - | |
| Ahy17g0096 | 677 | SUPERFAMILY | RING/U-box | 128 | 181 | - | - | |
| Ahy17g0096 | 677 | CDD | RING-HC | 134 | 172 | - | - | |
| Ahy17g0096 | 677 | SMART | ring_2 | 15 | 62 | IPR001841 | - | |
| Ahy17g0096 | 677 | SMART | ring_2 | 134 | 172 | IPR001841 | - | |
| Ahy17g0096 | 677 | SMART | ring_2 | 509 | 566 | IPR001841 | - | |
| Ahy17g0096 | 677 | ProSitePatterns | Zinc finger RING-type signature. | 524 | 533 | IPR017907 | - | |
| Ahy17g0096 | 677 | Pfam | RING-type zinc-finger | 509 | 564 | IPR027370 | - | |
| Ahy17g0096 | 677 | ProSitePatterns | Zinc finger PHD-type signature. | 15 | 62 | IPR019786 | - | |
| Ahy17g0096 | 677 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 495 | 617 | IPR013083 | - | |
| Ahy17g0096 | 677 | SMART | G9a_1 | 260 | 417 | IPR003105 | - | |
| Ahy17g0096 | 677 | SMART | PHD_3 | 14 | 63 | IPR001965 | - | |
| Ahy17g0096 | 677 | Pfam | SAD/SRA domain | 267 | 416 | IPR003105 | - | |
| Ahy17g0096 | 677 | Gene3D | - | 236 | 435 | IPR036987 | - | |
| Ahy17g0096 | 677 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 199 | IPR013083 | - | |
| Ahy17g0096 | 677 | ProSiteProfiles | YDG domain profile. | 265 | 413 | IPR003105 | - | |
| Ahy17g0096 | 677 | MobiDBLite | consensus disorder prediction | 635 | 654 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy17g0096 | Ahy-Chr17 | 1193014 | 1196950 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy17g0096 | 1 | 600 | C2H2 Transcription Factor Family | AT5G39550 | 59.046 | 0.0 | 692 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy17g0096 | K10638 | - | gmx:100786796 | 938.332 |