Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0087 ATGTTTGGAAACAAAACTGAAGGGAAAAAAAGGAAGACTGCAGAGGCAGCGCATGGGGTGCGTAAAGTGAAGAAGAAGCAAAGAAAGAAATGTGGAGAGAGCTGGGAGAAGTGGAAGGATCATATTCATAAAGCTCGTAAGTCGCAAGTTGAAGTTGGCGGAGTTACAGGGTTGCAGCCTGAGCTTCAAACTGCCGCTGCTGATTCCTTCTCAGATCATCCTCCTCATCGCCTCCAGACATGTGCTGCAAATGCAAATGAAAAAGGTGACAAGGCCTCCTTGATTCCTCACTCCAGACGGCCTGCACTCCCCTCTCTGCAAATACCCCCATGGTCACTAGATGCCGCATTATCTTCTTTCGCAAAGACGGATGGTCCTTCCCTCTCCAGTCCCATTTCTGCTTCCACATCCACCTCTTCTAGAGGACTTCCGCCAAGGCCGAATTCGGCCAGAGTCAGGCCTTCCATGAGAAGTATAATTCCTCAAGGGAACTTCAGGGCCAGAACTAGTCCCCGCGATGCTGAAAGGACGGTTCTCATGGTTCCTGATACTACCCTGTCAAATGCACTTTTGGATAAGCCTTCTACTTCAAGGACTCTCTCTCTTAGTGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATTGCATCTTTGGGTCAAGAAAGTGTACACGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCACATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCACCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACCTCAACTGGTGATGCTTCAGTCATGGAGATTGCTATTGAGGATGCTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCGCTTGCTCATCAAGACTGTGCGGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCATCAAATGTGCCACAACCAAGGGAAATAGCTTATTACAGGATCTGGAATGATATACCTGTACTTGTCTTGGTTAGCATGCTTGCTTACTTCTGCTTTTTGGAGCAACTACTGGTTTCAGATTTGGGTCCTCGAGCTCTTGCAATTGCGTTACCTTTCTCCTGTGTTTTGGGTCTCCTAACATCTATGATTGCGTCAACCATGGTGAGCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGTTCGCAATTCTCATCTTGTTTGCTCACGTATTTTTTAATATGCTTAATGTCAATCCAATTCTGTCGATCCTTCTTTCCTCATTCATTGGATTCGGGATGACAATAAGCATGAATTGTCTCCTTTCGGAATATGTTAGATGGAGAGCAAATAGGCAGAATCAAACACCCAATGAGAATGGTAACAGTCTACAGCAGCAGCATCAAGAACAAATAGAGCAACAAGAGCAACATCGATGA 1638 0.456 MFGNKTEGKKRKTAEAAHGVRKVKKKQRKKCGESWEKWKDHIHKARKSQVEVGGVTGLQPELQTAAADSFSDHPPHRLQTCAANANEKGDKASLIPHSRRPALPSLQIPPWSLDAALSSFAKTDGPSLSSPISASTSTSSRGLPPRPNSARVRPSMRSIIPQGNFRARTSPRDAERTVLMVPDTTLSNALLDKPSTSRTLSLSGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKATKLRCTQSRVLIRIISARRHLATVDGTSTGDASVMEIAIEDATADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPSNVPQPREIAYYRIWNDIPVLVLVSMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLTSMIASTMVSRSYVWAYACFQFAILILFAHVFFNMLNVNPILSILLSSFIGFGMTISMNCLLSEYVRWRANRQNQTPNENGNSLQQQHQEQIEQQEQHR* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0087 545 SUPERFAMILY RING/U-box 312 367 - -
Ahy17g0087 545 MobiDBLite consensus disorder prediction 122 145 - -
Ahy17g0087 545 PANTHER OS02G0165000 PROTEIN 74 542 - -
Ahy17g0087 545 PANTHER OS02G0165000 PROTEIN 74 542 - -
Ahy17g0087 545 MobiDBLite consensus disorder prediction 1 36 - -
Ahy17g0087 545 CDD RING_CH-C4HC3_MARCH 316 364 - -
Ahy17g0087 545 ProSiteProfiles Zinc finger RING-CH-type profile. 308 370 IPR011016 GO:0008270
Ahy17g0087 545 MobiDBLite consensus disorder prediction 522 537 - -
Ahy17g0087 545 Pfam RING-variant domain 316 363 IPR011016 GO:0008270
Ahy17g0087 545 SMART ringv_2 315 364 IPR011016 GO:0008270
Ahy17g0087 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 371 IPR013083 -
Ahy17g0087 545 MobiDBLite consensus disorder prediction 122 158 - -
Ahy17g0087 545 MobiDBLite consensus disorder prediction 522 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0087 Ahy-Chr17 1141214 1146149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0087 299 370 C3H Transcription Factor Family AT2G37950 46.575 8.73e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0087 - - ahf:112765571 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0026 17 337032 342557 Ahy17g0087 17 1141214 1146149 PCT
Ahy17g0087 17 1141214 1146149 Ahy17g0026 17 337032 342557 PCT