Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0026 ATGAGAGAAAAACCAGTCAAATTAATTTGTAAGTTATGTTTGGAAATAAAACTGAAGGAAAAAAAAAGGAAGACTGGAGAGGCAGCGCATGGGGTGTGTAAAGTGAAGAAGAAGCAAAGAAAGAAATGTGGAGAGAGCTGGGAGAAGTGGAAGGATCATATTCATAAAGCTCGTAAGTCGCAAGTTGAAGTTGGCGGAGTTACAGGTTTGCAGCCTGAGCTTCAAACTGCTGCTGCTGATTCCTTCTCAGATCATCCTCTTCATCGCCTCCAGACATGTGCTGCAAATGCAAATGAAAAAGGTGACAAGGCTTCCTTGATTCCTCACTCCAGACGGCCTGCACTCCCCTCTCTGCAAATACCCCCATGGTCACTAGATGCCGCATTATCTTCTTTCGCAAAGACGGATGGTCCTTCCCTCTCCAGTCCCATTTCTGCTTCCACATCCACCTCTTCTAGAGGACTTCCGCCAAGGCCAAATTCGGCCAGAGTCAGGCCTTCCATGAGAAGTATAATTCCTCAAGGGAACTTCAGGGCCAGAACCAGTCCCCGCGATGCTGAAAGGACGGTTCTCATTGTTCCTGATACTACCCTGTCAAATGCACTTTTGGATAAGCCTTCTACTTCAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATTGCATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCACCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATGCTTCAGTCATGGAGATTGCTATTGAGGATGCTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACGCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCGCTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACAGGATCTGGAATGATATACCTGTACTTGTCTTGATTAGCATGCTTGCTTACTTCTGCTTTTTGGAGCAACTACTGGTTTCAGATTTGGGTCCTCGAGCTCTCGCAATTGCATTACCTTTCTCCTGTGTTTTGGGTCTCCTAACATCTATGATTGCGTCAACCATGGTGAGCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGTTCGCAATTCTCATCTTGTTTGCTCACGTATTTTTTAATATGCTTAATGTCAATCCAATTCTGTCGATCCTCCTTTCCTCATTCATTGGATTCGGGATGACAATAAGCATGAATTGTCTCCTTTCGGAATATGTTAGATGGAGAGCAAATAGGCAGAATCAAACACCCAATGAGAATGGTAACAGTCTAGAGCAGCAGCATCAAGAACAAATAGAGCAACAAGAGCAACATCGATGA 1674 0.4456 MREKPVKLICKLCLEIKLKEKKRKTGEAAHGVCKVKKKQRKKCGESWEKWKDHIHKARKSQVEVGGVTGLQPELQTAAADSFSDHPLHRLQTCAANANEKGDKASLIPHSRRPALPSLQIPPWSLDAALSSFAKTDGPSLSSPISASTSTSSRGLPPRPNSARVRPSMRSIIPQGNFRARTSPRDAERTVLIVPDTTLSNALLDKPSTSRTLSLNGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKATKLRCTQSRVLIRIISARRHLATVDGTSTGDASVMEIAIEDATADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPPNVPQPREIAYYRIWNDIPVLVLISMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLTSMIASTMVSRSYVWAYACFQFAILILFAHVFFNMLNVNPILSILLSSFIGFGMTISMNCLLSEYVRWRANRQNQTPNENGNSLEQQHQEQIEQQEQHR* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0026 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 383 IPR013083 -
Ahy17g0026 557 MobiDBLite consensus disorder prediction 136 157 - -
Ahy17g0026 557 CDD RING_CH-C4HC3_MARCH 328 376 - -
Ahy17g0026 557 SMART ringv_2 327 376 IPR011016 GO:0008270
Ahy17g0026 557 PANTHER OS02G0165000 PROTEIN 88 554 - -
Ahy17g0026 557 SUPERFAMILY RING/U-box 324 379 - -
Ahy17g0026 557 MobiDBLite consensus disorder prediction 534 548 - -
Ahy17g0026 557 Pfam RING-variant domain 328 375 IPR011016 GO:0008270
Ahy17g0026 557 ProSiteProfiles Zinc finger RING-CH-type profile. 320 382 IPR011016 GO:0008270
Ahy17g0026 557 PANTHER OS02G0165000 PROTEIN 88 554 - -
Ahy17g0026 557 MobiDBLite consensus disorder prediction 136 170 - -
Ahy17g0026 557 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0026 Ahy-Chr17 337032 342557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0026 311 382 C3H Transcription Factor Family AT2G37950 46.575 1.13e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0026 - - ahf:112765571 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0026 17 337032 342557 Ahy17g0087 17 1141214 1146149 PCT
Ahy17g0087 17 1141214 1146149 Ahy17g0026 17 337032 342557 PCT