Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0001 ATGGCGAGGCCTTCGAAGCCGCAAGTATCTTCCGACGAAGCTATCTCTAGCGGTTCGAGCTCCGAGGAGGAGGAGCAGGTCAACCAGCAGATCAATGAAGAGGACGAGGAGGAGCTTGAGGCGGTGGCTCGTCAAGCTAGCTCCGACGACGACGATGACGAAGCCGGAAATGATAATTCGCACGATGACGACGAAGATCCTGCTGCCGCCGGAGATGCTGACGAGGATGAGCAGGGTGAAGATGCTGTTGATCCTGGCAAGCGGGAGAAAGCTAGATTGAAAGAGATGCAGAAAATGAAGAAGCAGAAGATTCAGGAGATATTGGATGCACAAAATGCAGCCATAGATGCCGACATGAACAATAGAGGAAAAGGAAGACTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGGCAAGAGGAAGGGGCCGCCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAGGAAGATGGTTTATCAAACACTCGTCTTGTGACACAACCATCATGCATCCAAGGGAAATTGAGGGACTACCAACTTGCTGGGCTAAACTGGCTTATAAGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTGGGTTATTTACATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCCAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTACGTGCAGTAAAGTTCCTTGGCAACCCTGAAGAGAGGAGATATATAAGGGAGGAATTACTGGTAGCCGGGAAGTTCGATGTCTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTACATTGCGTCGATTTAGTTGGCGCTACATCATTATCGATGAAGCCCATCGAATTAAGAATGAAAATTCCTTGCTTTCCAAAACAATGAGACTCTACAACACAAATTATCGCCTCCTTATTACCGGCACACCGCTTCAGAACAATCTTCATGAACTCTGGTCTCTGCTCAACTTTCTTCTTCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAGAATGACCAACAAGAGGTTGTCCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGTAGGTTGAAGTCCGATGTTGAGAAAGGGTTGCCGCCTAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTACTATAGAGCGCTTCTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAGCTACGAAAATGTTGCAATCATCCATATCTTTTCCAGGGTGCTGAACCCGGTCCTCCATATACAACAGGGGATCATCTCATTACTAATGCTGGTAAAATGGTTCTCTTGGATAAGTTACTTCCTAAATTGAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCACTATTGTCGCATAGATGGCAATACCGGTGGAGATGAGCGGGATGCTTCCATTGACGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGAATTAACCTTGCTACTGCTGATGTTGTCATCCTATATGATAGTGACTGGAACCCACAAGTTGACTTGCAAGCCCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTCCAAGTTTTTCGGTTTTGCACAGAGTATACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGACGGTTGGCTGAGCAAAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCAGAAATGGTTTTCAGTTCCAAAGATAGCACTATTACAGATGAGGACATTGATAGAATCATTGCTAAAGGAGAGGAAGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGATAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAATTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACATTACGACAAGGAGGTCCTGCTAAACCAAAGGAGCCACGAATTCCTAGGATGCCTCAGTTGCACGACTTCCAGTTTTTTAACACACAAAGGCTTAGTGAGTTGTATGAAAAGGAAGTGCGCTACCTAATGCAAACGCATCAAAAGAATCAGATAAAGGATTCAATAGATGTTGATGAACCAGAAGATGTGGGAGATCCATTGACTGCTGAAGAATTGGAAGAAAAGGAGCGCCTTCTAGAGGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATCCGGGCTTGCGAAAAGTATGGCCGAAATGATATCAAAGGTATTGCTTCCGAGATGGAAGGGAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCACGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAGTTGGACCGATACAAGAATCCATGGCTAGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATAGGTTCATGATATGCATGGTTCACAAACTGGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGTTTTGACTGGTTTGTTAAGTCTCGCACAACACAAGAACTTGCAAGGAGGTGTGACACACTCATTCGCCTGGTAGAAAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCGCGCAAAGAGAAGAAACTTGCAAAGACCATGACCCCATCAAAGCGGACCCTGGCAAGACAGACAGAATCTCCATCTTCTTTGAAGAAGCGCAAGCAATTAACCATGGATGATTATGGAAGTGTGGGAAAAAGGAGAAAATAA 3210 0.428 MARPSKPQVSSDEAISSGSSSEEEEQVNQQINEEDEEELEAVARQASSDDDDDEAGNDNSHDDDEDPAAAGDADEDEQGEDAVDPGKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKARGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRYIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYHYCRIDGNTGGDERDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKTMTPSKRTLARQTESPSSLKKRKQLTMDDYGSVGKRRK* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 1047 1069 - -
Ahy17g0001 1069 Coils Coil 93 113 - -
Ahy17g0001 1069 SMART sant 845 894 IPR001005 -
Ahy17g0001 1069 SMART sant 947 1008 IPR001005 -
Ahy17g0001 1069 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 142 174 - -
Ahy17g0001 1069 Gene3D ISWI, HAND domain 746 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ahy17g0001 1069 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Ahy17g0001 1069 SMART helicmild6 525 609 IPR001650 -
Ahy17g0001 1069 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 757 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ahy17g0001 1069 Pfam SLIDE 902 1012 IPR015195 GO:0003677|GO:0005634|GO:0006338
Ahy17g0001 1069 Coils Coil 1002 1029 - -
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 9 26 - -
Ahy17g0001 1069 ProSiteProfiles SANT domain profile. 844 896 IPR017884 -
Ahy17g0001 1069 CDD SANT 848 892 IPR001005 -
Ahy17g0001 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 1 96 - -
Ahy17g0001 1069 CDD SF2_C_SNF 495 620 - -
Ahy17g0001 1069 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Ahy17g0001 1069 Gene3D - 415 707 IPR027417 -
Ahy17g0001 1069 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Ahy17g0001 1069 SMART ultradead3 190 382 IPR014001 -
Ahy17g0001 1069 Gene3D - 845 899 - -
Ahy17g0001 1069 Coils Coil 20 40 - -
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 1016 1033 - -
Ahy17g0001 1069 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Ahy17g0001 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 409 IPR027417 -
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 81 96 - -
Ahy17g0001 1069 Gene3D iswi atpase 900 932 - -
Ahy17g0001 1069 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1069 - -
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 51 80 - -
Ahy17g0001 1069 Pfam HAND 758 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Ahy17g0001 1069 SUPERFAMILY Homeodomain-like 900 1022 IPR009057 -
Ahy17g0001 1069 Gene3D - 933 1036 - -
Ahy17g0001 1069 SUPERFAMILY Homeodomain-like 848 898 IPR009057 -
Ahy17g0001 1069 MobiDBLite consensus disorder prediction 1016 1069 - -
Ahy17g0001 1069 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1069 - -
Ahy17g0001 1069 Gene3D - 195 410 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0001 Ahy-Chr17 66431 75525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0001 186 636 RAD5 or RAD16-like Gene Family AT1G02670 26.916 3.15e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy17g0001 SNF2_N 1.70E-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0001 K11654 - gmx:100809750 1885.92