Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3603 ATGGCAGAGATGGGTGAGGAGGTGAAAGCAATTGTTCCCGAGTCTGTGCTTAAGAAGCAGAAAAGGGAGGAGGAATGGGCCTTGAAGAAAAAGGAGGAGCTGAATGCTGGAAAGAAGAAGAGAGCTGAGAGCCGCAAGCTCATTTACAGCAGGGCAAAGCAATATGCAAAGGAATACCAGGAGCAGGAAAAGGAGCTGATCCAATTGAAGCGGGAAGCAAAGCTGAAAGGTGGATTCTATGTTGATCCAGAGGCTAAACTCCTGTTTATCATCCGCATCCGTGGTATCAATGCCATGGACCCCAAGTCAAGAAAGATCTTGCAGTTGTTGAGGTTGAGACAGATCTTTAATGGTGTATTCCTCAAGGTTAACAAAGCAACCATGAATATGCTGCACAGGGTAGAGCCGTATGTTACATACGGGTATCCCAATCTGAAGAGTGTTAGAGAATTAATTTACAAGAGAGGCTATGGAAAAGTTGATAAGCAGAGAATTGCTTTGACAGACAACGCCATCATTGAACAGACATTGGGGAAGCACGGAATTATATGCGTTGAAGATCTGATCCACGAGATAATGACAGTTGGTCCTCACTTCAGAGAAGCAAACAACTATCTATGGCCCTTCAAATTGAAGGCTCCATTGGGTGGTTTGAAGAAGAAAAGAAATCACTATGTTGAAGGAGGTGACGCAGGTAACAGGGAAGCTTACATAAATGAGCTTATTAGAAGGATGAATTAA 741 0.4359 MAEMGEEVKAIVPESVLKKQKREEEWALKKKEELNAGKKKRAESRKLIYSRAKQYAKEYQEQEKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDKQRIALTDNAIIEQTLGKHGIICVEDLIHEIMTVGPHFREANNYLWPFKLKAPLGGLKKKRNHYVEGGDAGNREAYINELIRRMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3603 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Ahy16g3603 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Ahy16g3603 246 Gene3D - 87 191 IPR036919 -
Ahy16g3603 246 Gene3D - 192 246 IPR036919 -
Ahy16g3603 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Ahy16g3603 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Ahy16g3603 246 PANTHER 60S RIBOSOMAL PROTEIN L7 1 246 IPR039699 -
Ahy16g3603 246 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 1 246 - -
Ahy16g3603 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Ahy16g3603 246 Coils Coil 52 76 - -
Ahy16g3603 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3603 Ahy-Chr16 153708665 153712717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3603 7 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.167 2.35e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3603 K02937 - zju:107429678 409.453