Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3477 ATGGATAGACAATATGATTTGTTAGAGATGATTGCACCGCCAAAAGAGAGCTGGAAGATTCATGTCAGAGTAATCAGACTCTGGTCTTTACCAAAATTCAAAGACCCCAAGTCCAGTAGCTCTATTGAAATGGTATTGATGGATGAGCAGGGAACAACTATGCATGCTTCTGTAGGTGAAGATTTGATATCTGTGTTCGAGTCATTGATATCGGAAGGAACTGTGTATGTTTTTACATACTTTGGAGTTAACAACAACTGTGGGTTGTATCGCACAACATCGCATCAATTTCGGTTATTTTTTCAAGATAGAACTACTATCTTACCCTCTTTCTGTGATGCAATACCGTTATATGGTATTAAGTTAGTTCCTTTTAGGGAAATTATGGGATACTCTCCTCATCATCCTTTTTTGGTTGACGTTGCTGGAGTTATGGCCGGCGTGGAGGGTGAGAGGAAATACATGAACGATGGTAAACTTATTAACATGATGGTCATTCATATTGAGAATGATGGTTTACGGCTTAATATTGTTGTTCTTGGAGAGATGGTGGACCGGATCAAGGATTTTCTAGCATCGGGCGATCAACAACTGCCAATAGTTATTTTTCAATTTGTAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCAGATATTCCTGAGGCTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACCTGTCTGTGGTTTCTGGCAAATCAGCATATCTTGATGAAGATGAAGTTTTATATTCTATTGGGAGGAAGACAATAAAGGAGTTACGTGCTGCTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTGTTTGCAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGATGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGTATAAATTGAATTTGTTGGTTTTTGATGGTACTGGTACAACGAACTTTGTTGTATTCGATAAAGAGGTCGCAGCACTATTTGGACGAACCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGAAAGCAAGCAAAGATCCTACTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTCTATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATTCTTATGATGTATCGGTGATACGTTCTGATTCTTCCAATTTACCGAGGTGGAGGGACACTCAAGGCCCGGTAAAATCTGGTGTACCCCGTGCTGATCCTATTAACCCTATGCATCCTCGAGGTGAAGATGGATGTTCTGTTTGTGATGAGTCACCTGATCCAATTGTGAAAAATTTGTCTGTTATTAAAAAACCTGTTGTGAGGCGTCTGTTGGATGAGTTCAACATGTCTGGTGCTCCTTCCATTAAAAAGTAG 1467 0.4015 MDRQYDLLEMIAPPKESWKIHVRVIRLWSLPKFKDPKSSSSIEMVLMDEQGTTMHASVGEDLISVFESLISEGTVYVFTYFGVNNNCGLYRTTSHQFRLFFQDRTTILPSFCDAIPLYGIKLVPFREIMGYSPHHPFLVDVAGVMAGVEGERKYMNDGKLINMMVIHIENDGLRLNIVVLGEMVDRIKDFLASGDQQLPIVIFQFVRVKNAGGTNIVQNIMYGTRLLINPDIPEALMLRKREISQYLSVVSGKSAYLDEDEVLYSIGRKTIKELRAAADVGFYVVRATVLDVEPVPSWWYKSCVCSVKAEANADEYFCDGCNRDVNNVVDRYKLNLLVFDGTGTTNFVVFDKEVAALFGRTCTEMVKELNEKGKASKDPTGFNEFFLDKEFLFKVEVETTGWCDSYDVSVIRSDSSNLPRWRDTQGPVKSGVPRADPINPMHPRGEDGCSVCDESPDPIVKNLSVIKKPVVRRLLDEFNMSGAPSIKK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3477 488 Gene3D - 4 109 IPR012340 -
Ahy16g3477 488 SUPERFAMILY Nucleic acid-binding proteins 267 407 IPR012340 -
Ahy16g3477 488 SUPERFAMILY Nucleic acid-binding proteins 121 241 IPR012340 -
Ahy16g3477 488 CDD RPA1_DBD_A_like 19 107 - -
Ahy16g3477 488 PANTHER REPLICATION FACTOR A 1, RFA1 20 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy16g3477 488 MobiDBLite consensus disorder prediction 423 448 - -
Ahy16g3477 488 Pfam Replication factor-A C terminal domain 282 404 IPR013955 -
Ahy16g3477 488 CDD RPA1_DBD_C 269 412 IPR013955 -
Ahy16g3477 488 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 364 - -
Ahy16g3477 488 Pfam Domain of unknown function DUF223 43 128 IPR003871 -
Ahy16g3477 488 Gene3D - 258 418 IPR012340 -
Ahy16g3477 488 Gene3D - 114 246 IPR012340 -
Ahy16g3477 488 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3477 Ahy-Chr16 152105641 152112238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3477 1 397 Core DNA Replication Machinery Family AT5G08020 21.635 2.24e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3477 - - ahf:112729129 980.704