Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3463 ATGGGAACCGAGAGCACGACAAACTACTCTTATTTGGGGCGCAGCATAAGCCATCTCACCATCAACGAGGAGTCCTCTTCCTCCGCCTTCAGTGATTGCAATAGCGATAGATCCGGTGAATTCTCTGCTGCCTCTTCCCAGACTCGCCGCCTCCTGCTTGCCTGTGCCACCGACAACTCCGACGAATTAATCCGACAGCTTGTGTCTGATCTGGGCTCTGATTCCGTCAATGAGCAAAAACAAGCCGCCATGGAGATCCGTCTCCTTGCGAAGAATAAGCCGGAAAATCGAATTAGAATCGCTGAAGCTGGAGCGATCAAACCGTTAATTTCGCTTATTTCGTCGCAAGACCTTCAACTTCAGGAGTACGGCGTCACAGCTATCCTCAACTTATCCCTATGTGACGAGAACAAAGATGCCATCGCTTCTGCCGGGGCGATTCGATCTCTGGTTCGGGTGCTGAGCTCAGGAAATTCAACAGCAAAGGAGAACGCTGCGTGCGCGCTTCTCCGACTGTCGCAGGTGGATGCTTATAAGCCGGCAATAGGAAGGGCCGGCGCGATTCCGCCGCTTGTAAAGCTTCTAGAAACCGGAAGTGTCCGCGGAAAGAAGGACGCGTCAACTGCCCTGTACTCGCTCTGTTCTACTAAAGATAACAAGGTAAGGGCAGTGAAGGCAGGGATAATGAGGGTGCTGGTGGAGTTGATGGCGGACTTGGAGGGAGACATGGTAGACAAGTCAGCTTACGTGGCGAGCGTAGTGGTGACAGTAGCGGAGGGAAGGGCTGCGTTTGTGGCAGAAGGGGGGATTCCAGTGCTGGTAGAGATAGTGGAGGTTGGGACGCAGAGGCAAAAAGAAATCGCCGTGGTTATACTTTTGCAGATTTGTGAAGAGAGTGCGGCTTACAGAAAGCTTGTGTTTGACGAAAGCGCCATCCCTCCTTTGGTTGCTTTGTCCCAATCTGGCACCAATCGCGCCAAAGAAAAGGCAGAGAAACTGATTGAGCTTCTAAGGCAACCAAGATCCAACAATGGCACTGCTCGTGCGTCAGAAGTGTCACTGTGA 1065 0.5221 MGTESTTNYSYLGRSISHLTINEESSSSAFSDCNSDRSGEFSAASSQTRRLLLACATDNSDELIRQLVSDLGSDSVNEQKQAAMEIRLLAKNKPENRIRIAEAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKDAIASAGAIRSLVRVLSSGNSTAKENAACALLRLSQVDAYKPAIGRAGAIPPLVKLLETGSVRGKKDASTALYSLCSTKDNKVRAVKAGIMRVLVELMADLEGDMVDKSAYVASVVVTVAEGRAAFVAEGGIPVLVEIVEVGTQRQKEIAVVILLQICEESAAYRKLVFDESAIPPLVALSQSGTNRAKEKAEKLIELLRQPRSNNGTARASEVSL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3463 354 SMART arm_5 93 133 IPR000225 GO:0005515
Ahy16g3463 354 SMART arm_5 175 215 IPR000225 GO:0005515
Ahy16g3463 354 SMART arm_5 134 174 IPR000225 GO:0005515
Ahy16g3463 354 SMART arm_5 256 297 IPR000225 GO:0005515
Ahy16g3463 354 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 346 - -
Ahy16g3463 354 PANTHER U BOX DOMAIN-CONTAINING 1 346 - -
Ahy16g3463 354 SUPERFAMILY ARM repeat 61 336 IPR016024 -
Ahy16g3463 354 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Ahy16g3463 354 Pfam Armadillo/beta-catenin-like repeat 178 215 IPR000225 GO:0005515
Ahy16g3463 354 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Ahy16g3463 354 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Ahy16g3463 354 Gene3D - 177 246 IPR011989 -
Ahy16g3463 354 Gene3D - 17 176 IPR011989 -
Ahy16g3463 354 Gene3D - 247 349 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3463 Ahy-Chr16 151944459 151947346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3463 42 344 U-box Gene Family AT2G23140 48.845 1.32e-82 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3463 - - gmx:100797550 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3463 16 151944459 151947346 Ahy16g3463 16 151944459 151947346 ECH