Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3458 ATGGAATTTCTAGGAGCATTCTCTAATAATATAGAATTGGATTGCTTCAAAATGTTTTCAACTGAAAAAGAGCATGATTTCACTTACACTACTACTACTTCACAATTATTTCTAGATCAACGTTCATCACTTCTTGTAGGAGAAGATGATGAATTGAACTTTGGATTAGTACAATCCACAATTTCCTCCAATCTTATTAGTGATGAAAATGAGCATTATTTGTTTCATTCTTTAGATGCTAATCCCAACACAAAAATGTTGCATTATAAGTCACAAGAAGAGAGTAGTTACAATAGCAGCAATTTGAGTGGTGGTGACACTAATTTCTTCAATGCCAACATGGATCTTACAACAAACTACTACTATTCTAGTAATTACCATGATGATCATGTGCTAGCAAATGATGTTTCTATATCCATGGAGTTATGTATGGAGGAGAAGAATCTTGCATGTTTTGCTCCATCAATGGAAGACAATGATGATCATGGATTATTGGAGAATTATGATCATTATCAATGTCATCAAATGGAAAATGTTGATGTTGTGCAGCTCAAGAGGAAGATTGTTGAAGTACCAGAATTGGATGTGTCTGCTGATGAAAACAATACAAGTAACGGATATAAGAATCAAAAGAAAAAAATTTTCGTCGCGAAAGATGAGCAAGATTGCATGAAAAATGAAAAGTCTAGGAAGAGAAAAGTTGTTAGAAATGGGAATGAAGGAGAAGAGAGAAATAATAATGTAGGGTTAGATGGACAGAGCTCAAGTAGTAACATTAACATATGTGAGGATGACAATGCTTCTGAAGAAAACAATGGAGGGGTAACTTCGGTATCTCACTCAAATGGGAAAACAAGAACCATTAGAGGAACAGCAGCAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAAAGGATAAATGCGCGATTAAGAATTTTGCAGAGTCTTGTTCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAATTACGTAAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCTCTTGCTTATAATGGACTTGACATTGGACTCAAACTCAATAACCTCAAGAATTTTTCACCATCACCATGA 1140 0.35 MEFLGAFSNNIELDCFKMFSTEKEHDFTYTTTTSQLFLDQRSSLLVGEDDELNFGLVQSTISSNLISDENEHYLFHSLDANPNTKMLHYKSQEESSYNSSNLSGGDTNFFNANMDLTTNYYYSSNYHDDHVLANDVSISMELCMEEKNLACFAPSMEDNDDHGLLENYDHYQCHQMENVDVVQLKRKIVEVPELDVSADENNTSNGYKNQKKKIFVAKDEQDCMKNEKSRKRKVVRNGNEGEERNNNVGLDGQSSSSNINICEDDNASEENNGGVTSVSHSNGKTRTIRGTAADPQSLYARKRRERINARLRILQSLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLKLNNLKNFSPSP* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3458 379 CDD bHLH_AtIND_like 292 354 - -
Ahy16g3458 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 372 - -
Ahy16g3458 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Ahy16g3458 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 355 IPR036638 GO:0046983
Ahy16g3458 379 MobiDBLite consensus disorder prediction 224 297 - -
Ahy16g3458 379 Pfam Helix-loop-helix DNA-binding domain 301 341 IPR011598 GO:0046983
Ahy16g3458 379 MobiDBLite consensus disorder prediction 224 240 - -
Ahy16g3458 379 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 372 - -
Ahy16g3458 379 Gene3D - 291 348 IPR036638 GO:0046983
Ahy16g3458 379 SMART finulus 297 346 IPR011598 GO:0046983
Ahy16g3458 379 MobiDBLite consensus disorder prediction 241 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3458 Ahy-Chr16 151895394 151897570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3458 163 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 50.000 4.10e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy16g3458 HLH 2.30E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3458 - - aip:107648570 754.592