Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3418 ATGAGTAAGCTTCAGAGTGATGCACTGAGAGAAGCAATCACTGGGATAGTGGCTGATTCCAAAGAGAAGAATAGGAAGTTTGTTGAGACCATTGAGCTCCAAATTGGACTCAAAAACTATGACCCACAAAAGGATAAGCGTTTCAGCGGTTCTGTAAAGTTGCCACACATCCCGAGGCCCAAGATGAAAATCTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCAGAGAAAATAGGATTGGATTGGATGGATGTTGAAGCATTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAGAAACTTGCGAAGAAATATCATGCTTTCTTGGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTCTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCCACACTTGTTACCCACCAAGAATCCCTCGAGTCTAAAGTCAATGAGACCAAGGCTATGGTGAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTAGGCAATGTAAGCATGGAGGAAAAGCAAATCTTCCAAAACGTACAACTGAGCGTTAACTTCCTTGTGTCCTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCCTACCGTGTGTTTTGA 651 0.4301 MSKLQSDALREAITGIVADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3418 216 SUPERFAMILY Ribosomal protein L1 3 216 IPR023674 -
Ahy16g3418 216 CDD Ribosomal_L1 9 215 IPR028364 -
Ahy16g3418 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Ahy16g3418 216 Gene3D - 65 154 IPR016095 -
Ahy16g3418 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
Ahy16g3418 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Ahy16g3418 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Ahy16g3418 216 Gene3D - 21 211 - -
Ahy16g3418 216 Pfam Ribosomal protein L1p/L10e family 22 210 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3418 Ahy-Chr16 151388118 151390799 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3418 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.352 1.19e-129 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3418 K02865 - gmx:100808580 400.208