Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3326 ATGGCATACCAAGCGATTCAGGGCCCAAGCTCGGGATCGAGTTCAAGTTCGGGGTTTCAGTTATTGAACTCTCCTTTCGGTGACACCACATACACCAAGGTTTTCGTCGGAGGGCTGGCATGGGAGACTCAAAGTGAAACCATGCGCCGCCACTTCGAGCAATTTGGTGAAATTCTTGAGGCGGTAGTCATCACTGACAAGAACACCGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCGTGTGCTGATCCAACTCCAATCATTGATGGTAGAAGAGCTAATTGTAACTTGGCTTCACTCGGTCGACCACGCCCTCCGCTGCCTTATGGACGGATAAGACCAGCCTCCCCATATGTTGGAGGTTTGCAACCAGCGAGAGGAGCCTTTTTGGGAAGTTTCGGCTACCAGCAACCAGTTTCATACGGCTATCAACAGGGGTTGGTTTATCCACCTTATGGGTATACAACGTATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCATATATGGGTCAGCAGTACCTTCAGATATATGGAGTGCCTGGTGCAGTAAACACAACCATTTATCCCTCCTATGGACAAGTGGGTCAGGCTATGCCTAGTGGACATGGGTATACAGCAATGCAAGGCTATACAATACAAGGCCATCAGATCGTGCCATATGGTGGATCTAATGTTAATGCGATGTCAACTTCACCTATGCCTGCCATTCAAACACCATATCCTAGTGGAATCGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCACAGTTTATGCAAGGCAGTGGTCCTGACCAAACCGCTGGGTGA 861 0.4925 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGGLQPARGAFLGSFGYQQPVSYGYQQGLVYPPYGYTTYGPEYVYPQSMYNPYMGQQYLQIYGVPGAVNTTIYPSYGQVGQAMPSGHGYTAMQGYTIQGHQIVPYGGSNVNAMSTSPMPAIQTPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3326 286 Gene3D - 4 116 IPR012677 -
Ahy16g3326 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Ahy16g3326 286 SUPERFAMILY RNA-binding domain, RBD 31 131 IPR035979 GO:0003676
Ahy16g3326 286 CDD RRM_RBM24_RBM38_like 32 107 - -
Ahy16g3326 286 PANTHER BOULE-RELATED 1 282 IPR037366 GO:0003729
Ahy16g3326 286 SMART rrm1_1 33 105 IPR000504 GO:0003723
Ahy16g3326 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Ahy16g3326 286 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3326 Ahy-Chr16 150210892 150216650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3326 21 215 C2H2 Transcription Factor Family AT2G19380 31.068 5.92e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3326 - - aprc:113864528 518.464