Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3315 ATGGAATTCACCTCTTCTTCTTTGCAAATCACTCCCATTGAAGACCCATCCATATCACAAGAGTTTTATTTCGGTAATTGCTTCTCCATCATCTTCAATTGCACCAAAAAATTGATCGAAATTATTGAACGCTCAAACCCAACTCCTGCGGTTCACTTTTCTTCTACTACAACTACAGCCACTGAAGCAATCTTGGTTCCTTGTACTCCACTCACAAACCTCAGCAGAGAAGACACAATCTTGTTGCATGAAATCTTTTCTTCACTACCTGTGTCACCTGAGGTATTGGACCAAATTTTACCTGACATAGGCGAAACTGCAAGAAGGATTTTAAGCAATGAAACGTGTGACTCCAACACGCGGGAGATGGTTGTGAACCTTCATGTTACCTCCTACATTGTTGTTCAAGATTCTGATATCTATAATGATGATCTCTGTCAAAACTTTTTTGAACGACTACAATTCGTGAATCTGTTGGAGAGATCGAAAACTGATGAGCAAGATGATGATGCTGAATGCGCCATTTGCTTGGAGAAGTTTGACCATGGTAATGAAGATTCAAGCGTAGAAATTGTTCGTACAAATTGCTCGCATGTTTTTCATGATCGCTGCTTGCTCCGCTGGCTCCGACGCTGTGCCAACTGTCAATCGCCATATTCTTGCCCATTGTGCCGCAGCATCATATTTCCAACTTCACAGATAGATGATGAATAG 714 0.4132 MEFTSSSLQITPIEDPSISQEFYFGNCFSIIFNCTKKLIEIIERSNPTPAVHFSSTTTTATEAILVPCTPLTNLSREDTILLHEIFSSLPVSPEVLDQILPDIGETARRILSNETCDSNTREMVVNLHVTSYIVVQDSDIYNDDLCQNFFERLQFVNLLERSKTDEQDDDAECAICLEKFDHGNEDSSVEIVRTNCSHVFHDRCLLRWLRRCANCQSPYSCPLCRSIIFPTSQIDDE* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3315 237 SMART ring_2 173 224 IPR001841 -
Ahy16g3315 237 Pfam Ring finger domain 172 225 IPR001841 -
Ahy16g3315 237 CDD RING-H2 173 225 - -
Ahy16g3315 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 231 IPR013083 -
Ahy16g3315 237 PANTHER RING ZINC FINGER PROTEIN-RELATED 144 233 - -
Ahy16g3315 237 ProSiteProfiles Zinc finger RING-type profile. 173 225 IPR001841 -
Ahy16g3315 237 SUPERFAMILY RING/U-box 166 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3315 Ahy-Chr16 150112294 150113007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3315 158 229 C3H Transcription Factor Family AT4G12190 40.789 2.24e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3315 - - adu:110273516 301.597