LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g3306	ATGGCATGTGAGCCTGTTACCGGAGCCCCTTTTCTCTGTCTCTCTGAGTTTGTGACCGCCACAAAAGAGACTCTTAGAGCATATAATGAAATTGTCCAAGCTAACATAAGCAACCAGCATAGATCAAGGCTTCACTTGGGGGCTATCGTGGCAGTTGGAGCATCAAAGCCTACTGTTAAGGCTGATGCAACTGGATTCTTCAAGGTGAAATATAAGATGATACAACTGGATTTTTCAAGCTTCCATATCCATGCTCTTGGTGACACTACCAATGGTTGCAATTCCACGAGTCCTCACTTCAATCCTCTTAACAAACACCATGAAGCTCTTGCCGATCATCACCGTCATGCTGGTGATTTGGGTAACATTCTTGCAGGCCTTGATGGGGTTGCTGAGATTTCTATCACAGATTCACAGATTCAGTTGAATGGAGTGCATTCCATACTTGGCATGGCAGTTGTTGTGCATGCTGATCCTGATGACCTTGGAAGGGGAATTGAGCCCTGGACTTTCGTTCAGAGGTTAGGAGAAGCTGTTTTCATTCCAGCAGGTTGTCTTCACCAAGTCAGAAATCTGAAGGTGAAAAAAATTACAGTACACACAATGAAAGATATGGTTGAAAATTTGGAGAAAGCACGGTTAGTGTTTGCGATCGTTACTCCTATCTGGTTTGCATTGTGA	681	0.4391	MACEPVTGAPFLCLSEFVTATKETLRAYNEIVQANISNQHRSRLHLGAIVAVGASKPTVKADATGFFKVKYKMIQLDFSSFHIHALGDTTNGCNSTSPHFNPLNKHHEALADHHRHAGDLGNILAGLDGVAEISITDSQIQLNGVHSILGMAVVVHADPDDLGRGIEPWTFVQRLGEAVFIPAGCLHQVRNLKVKKITVHTMKDMVENLEKARLVFAIVTPIWFAL*	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g3306	226	Pfam	JmjC domain, hydroxylase	155	193	IPR003347	-
	Ahy16g3306	226	PANTHER	SUPEROXIDE DISMUTASE [CU-ZN] 3	78	167	-	-
	Ahy16g3306	226	PANTHER	SUPEROXIDE DISMUTASE CU-ZN -RELATED	78	167	IPR024134	-
	Ahy16g3306	226	PRINTS	Cu-Zn-superoxide dismutase family signature	80	102	IPR001424	GO:0006801\|GO:0046872
	Ahy16g3306	226	PRINTS	Cu-Zn-superoxide dismutase family signature	116	125	IPR001424	GO:0006801\|GO:0046872
	Ahy16g3306	226	PRINTS	Cu-Zn-superoxide dismutase family signature	135	157	IPR001424	GO:0006801\|GO:0046872
	Ahy16g3306	226	SUPERFAMILY	Clavaminate synthase-like	164	194	-	-
	Ahy16g3306	226	CDD	Cu-Zn_Superoxide_Dismutase	48	165	IPR001424	GO:0006801\|GO:0046872
	Ahy16g3306	226	Gene3D	Superoxide dismutase, copper/zinc binding domain	31	179	IPR036423	GO:0006801\|GO:0046872
	Ahy16g3306	226	SUPERFAMILY	Cu,Zn superoxide dismutase-like	77	172	IPR036423	GO:0006801\|GO:0046872
	Ahy16g3306	226	Pfam	Copper/zinc superoxide dismutase (SODC)	69	164	IPR001424	GO:0006801\|GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g3306	Ahy-Chr16	149983208	149986216	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Ahy16g3306		Sod_Cu	2.20E-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g3306	K04565		-	ming:122061698	148.288