Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3202 ATGGATGAAAAGGTGGAAGCTCTTCAAGTGGAATTGCAACGTGTGAAAGAGGAGAATAGTGCTCTAAGATTGATGTTTGAGGTTCTAAGCAACAAATTCAAAAGCCTTCAATCCCAAATTCAAGATATAAACAAGGAATCGGAGCAAATAATAGGCTTCAATAATTCAATGCCTATTGTTGACTCAACAAATTGCAAGAGACCAAGACTACTAGAGTTTCCGACAGCTAAAAGGCCATTGCAAATCTTTGTCAGAATCAACCCCAAGGATGATACTTTGATGATAAGAGATGGATACCAATGGAGGAAGTATGGACAGAAGGTTACCAAAGACAATGTTTCACCAAGAGCCTACTTCAGGTGTTCCATGGCCCCTAGTTGCCCAGCCAAGAAGAAGGTGCAAAAATGCATACATGACAAGTCTATATTAGTTGCAACTTATGATGGAGAGCACAACCATGCTGCAATTCAAGATTCTTCAATGCCTTCTTCATCCACTCCCAAAGGCTCAGTGGTTAATAAAAATAACAATAATAATAGTAAAAATAATAATGATTTACCTCTTCCAATCTTAGAAAATTATAAAAAATGGTCTCATCAAACAGATTCAATAAGACTATGTTGTGATGATGTTACTATGCAAAAAAGTAACACCAAAATTGAAGAATATGCAAATTCCTTAATCAAAGATCCTGAGTTCACTGCAGCATTGGCTGAAGCAGTTGCACGCACCATCACTGGTCAGAGTAAGGAACAAGACCTAAACCTCAATTTGGGGTTCCAGCAGGGTGATGAAAACTGA 801 0.3795 MDEKVEALQVELQRVKEENSALRLMFEVLSNKFKSLQSQIQDINKESEQIIGFNNSMPIVDSTNCKRPRLLEFPTAKRPLQIFVRINPKDDTLMIRDGYQWRKYGQKVTKDNVSPRAYFRCSMAPSCPAKKKVQKCIHDKSILVATYDGEHNHAAIQDSSMPSSSTPKGSVVNKNNNNNSKNNNDLPLPILENYKKWSHQTDSIRLCCDDVTMQKSNTKIEEYANSLIKDPEFTAALAEAVARTITGQSKEQDLNLNLGFQQGDEN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3202 266 Coils Coil 5 46 - -
Ahy16g3202 266 Gene3D WRKY domain 82 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy16g3202 266 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 245 IPR044810 GO:0003700
Ahy16g3202 266 MobiDBLite consensus disorder prediction 156 187 - -
Ahy16g3202 266 ProSiteProfiles WRKY domain profile. 90 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy16g3202 266 Pfam WRKY DNA -binding domain 97 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy16g3202 266 PANTHER WRKY TRANSCRIPTION FACTOR 49 2 245 - -
Ahy16g3202 266 MobiDBLite consensus disorder prediction 155 187 - -
Ahy16g3202 266 SUPERFAMILY WRKY DNA-binding domain 91 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy16g3202 266 SMART WRKY_cls 95 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3202 Ahy-Chr16 148542622 148545425 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3202 2 241 WRKY Transcription Factor Family AT1G80840 36.162 1.47e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy16g3202 WRKY 4.70E-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3202 - - ccaj:109791737 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3202 16 148542622 148545425 Ahy6g2502 6 110000028 110002988 hybridization
Ahy16g3202 16 148542622 148545425 Ahy20g2079 20 117517205 117519430 PCT
Ahy16g3202 16 148542622 148545425 Ahy10g1635 10 94917202 94919745 PCT
Ahy20g2079 20 117517205 117519430 Ahy16g3202 16 148542622 148545425 PCT
Ahy10g1635 10 94917202 94919745 Ahy16g3202 16 148542622 148545425 PCT