Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3185 ATGGCAAACTGTCACCGGAACAACGTCGGATCCCTCGTTCTCGGCCACCACCCTACAAAGTCCTCCGCCGCTACCGTTAGTGGCAACGTCCGCCTGTGGAACTCCCTCTCCGCCGCCTCCTTCCGCCGCATTATCTTCGACGCCCTCAGCTGCGGTGGCGCCGCTTACCGCCGGAATAATCACACCGACTCAGCCTCCTCCACCGACGGATCCGATTCCGACTTCGAATGCCCGAAACCTAACCCTAACACGAAGCGCAATGTGAGGTCCGAGAAGCTCTCGGATCTCCTGAGCATGGCGGATTCGGAGGTGGACGCGGAAACCGAGACGAAGAAGAAGGAGGAGGCTCTTGACGACCTGAAGCGCCTCGTGTCGGAGCTTCAGGCGGAGGATTCGCCTCCGGTAAAGCGAGTAGCTGCAGCTTCCGCCGTGAGGAGGCTGGCGAGGGAGGACGCTGAGGTTAGAGTGACATTCGCAATGCTCGGAGCGATTCCGCCGCTTGCAGCCATGCTCGATTCAGAAGACCTCGATTCTCAGGTAGCTTCGCTCTACGCGTTGCTTAACCTTGGAATCGGAAACGATGCAAATAAAGCTGCTATTGTGAAAGTTGGGTCTGTACACAAGATGTTGAAGCTAATTGAATCTCCAGATTCTGTGGAAACATCAGTTTCAGAAGCAATAGTTGCAAACTTTCTCGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGATCCTCTGCAGCAGTACCATTCCTAGTTAGAACCCTCCAGAATTTAGATAATAAAACAAGCTCCCAAGCCAAACAAGATGCTCTCAGAGCAATGTACAATCTTTCAATCTTCCCAGGCAATGTTTCATTCATTTTGGAAACCAACTTGGTCCCATTTCTGATAAACTCCGTAGGAGATATGGAAGTAACCAACCGAGCCCTCGCAATCCTAAGCAACTTGGTGTCAACAAGAGAAGGTAGGAAGGCCACTAGTGCCGTCCCGGATGCTTTCCCTATCCTTGTGGATGTGTTGAATTGGACCGACTCACCGGAATGCCAAGAAAAGGCATCTTATGTTTTGATGATAATGGCGCACAAGTCTTATGGCGATAGGCAGGCCATGATTGAGGCTGGGATTGCGTCGTCACTCCTTGAGTTGTCCCTTCTTGGCACCACATTGGCACAGAAAAGGGCCTCAAGGATATTGGAATGTTTGAGGGTAGACAAAGGGAAGCAGGTTTCAGGGAGCTTTGGAGGGAATTTAGGCGCAACGGTATCCGCCCCAATCTGTGGATCGTCATCGTCTTGTGCAAAGATGGACGGAGGGGGAAAGGATGGTTCGGACGAGGAGGAGGAGATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAGTTAGTCCAGCAGAGTCTGCAAAACAATATGAGGAAGATTGCTAAAAGGGCCAATTTGCCTCAAGATACTGTTCCTTCAGATCATTTTAAATCACTCACTGCAAGTTCAACATCGAAGAGCCTGCCATTTTGA 1515 0.5083 MANCHRNNVGSLVLGHHPTKSSAATVSGNVRLWNSLSAASFRRIIFDALSCGGAAYRRNNHTDSASSTDGSDSDFECPKPNPNTKRNVRSEKLSDLLSMADSEVDAETETKKKEEALDDLKRLVSELQAEDSPPVKRVAAASAVRRLAREDAEVRVTFAMLGAIPPLAAMLDSEDLDSQVASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESPDSVETSVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRTLQNLDNKTSSQAKQDALRAMYNLSIFPGNVSFILETNLVPFLINSVGDMEVTNRALAILSNLVSTREGRKATSAVPDAFPILVDVLNWTDSPECQEKASYVLMIMAHKSYGDRQAMIEAGIASSLLELSLLGTTLAQKRASRILECLRVDKGKQVSGSFGGNLGATVSAPICGSSSSCAKMDGGGKDGSDEEEEMMSEEKKAVKQLVQQSLQNNMRKIAKRANLPQDTVPSDHFKSLTASSTSKSLPF* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3185 504 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 504 - -
Ahy16g3185 504 MobiDBLite consensus disorder prediction 478 504 - -
Ahy16g3185 504 Gene3D - 259 413 IPR011989 -
Ahy16g3185 504 Coils Coil 445 465 - -
Ahy16g3185 504 MobiDBLite consensus disorder prediction 485 504 - -
Ahy16g3185 504 Gene3D - 112 258 IPR011989 -
Ahy16g3185 504 MobiDBLite consensus disorder prediction 61 84 - -
Ahy16g3185 504 Coils Coil 103 130 - -
Ahy16g3185 504 MobiDBLite consensus disorder prediction 435 458 - -
Ahy16g3185 504 SMART arm_5 282 320 IPR000225 GO:0005515
Ahy16g3185 504 SMART arm_5 324 363 IPR000225 GO:0005515
Ahy16g3185 504 SMART arm_5 193 236 IPR000225 GO:0005515
Ahy16g3185 504 SMART arm_5 151 191 IPR000225 GO:0005515
Ahy16g3185 504 SMART arm_5 237 281 IPR000225 GO:0005515
Ahy16g3185 504 SUPERFAMILY ARM repeat 119 403 IPR016024 -
Ahy16g3185 504 MobiDBLite consensus disorder prediction 1 22 - -
Ahy16g3185 504 MobiDBLite consensus disorder prediction 61 87 - -
Ahy16g3185 504 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3185 Ahy-Chr16 148220213 148223935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3185 136 410 U-box Gene Family AT1G67530 30.142 1.32e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3185 - - mtr:MTR_1g014420 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3185 16 148220213 148223935 Ahy6g2490 6 109786736 109790378 hybridization
Ahy16g3185 16 148220213 148223935 Ahy20g2072 20 117122927 117125230 PCT
Ahy16g3185 16 148220213 148223935 Ahy10g1630 10 94331293 94333447 PCT
Ahy20g2072 20 117122927 117125230 Ahy16g3185 16 148220213 148223935 PCT
Ahy10g1630 10 94331293 94333447 Ahy16g3185 16 148220213 148223935 PCT