Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3180 ATGGCAGTGATGGATGAAAAAGATCATCATTTTCCTAAAGGAATGCGTGTTCTTGCTGTTGATGATGATCGAACATGTCTTATAGTTTTGAAGACTTTACTCCAAAAGTGTCATTATCAAGTAACAACCACAAACAATGCAATAACAGCATTGAAGCTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGACGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACTTACCTGTCATAATGTTATCTGTAGATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTGGTGAAACCTGTTAGAATTGAGGAGCTGAAGAATATTTGGCAGCATGTAATTAGGAGGAACAAGAATGATTCCCAGGAGCCAGAAAAACCTAGTAACAACCACGAAAATCCTGATTCAGATCAGAGTTCAAAGGCAAATAAAAAGAGGAAGGAACAAGAAGAGGAAGAGGAAGAGGAGGAGGAGGATGAAAATGACCATGACAACGGTGATGATCCGTCGGCGCAAAAGAAGCCTCGCGTGGTTTGGTCCGTCGACTTGCACCACAAATTTGTCACTGCCGTCGAGCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGACTTAATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGCTTTATCTGAGAAGAGTGAGCAACATGTCAAACCAACAACACTCTAACATTGGATCAGCCTTCAGCAGTGCAGACACATCATATCTGAGAATGAATCCTCTAAGCGGAATTGGACAATTACAAACACTCAATAATAACTCTGGTTATGGCTTAAGATCTTTTTCACCTTCTAACATGCTTAATAGATTCAACACTCCTTCAGCCCTCAATGCTCATGGTTTCAATTCCAATGATACCCAATTTCAGTTCCCATCTTCCGGCTTGCTCGGCCGCGGCCGCAGCAATAACAATCAGACTTATCTCTCCGGAGGAGGACTTAATTCTGTTCCAAACTTGAGCACTATCTTTGATTCTAAACAGAGTTTTGTTAGACAGAAACCAAGCTCTCCCATTTTGGGAGTTTCCAACAATGGTTTGATCTTGGAACAGAATCATCAAGGTGGAATCTATGATAATATTCCAAATTCTGTAGGATCTTCTTCCCAAGAACAAATTTCATTCCCTTCTTTACTTGATCATCATCATGGTAATAGTTGCAACAATGATATTTGGTCAAATGAATGCAACACTTTGATGAATTCTTCAACTTTTCAAGGTGGGAATCTTAGTGGTGCTTCATCAATCACTTCACTCTCTAGCCAATCCCATGATTCATTCACTGATTTGAATTTCCAAGGAGTGAATTTCACCAACAATAACAATAGTAACAATGTGCAATTTCAAGGGTGGAATAGTAACAATAATAACAATAATCAGAATGGAAATTACCATGCATTGAGTGGCCTTATTGATCCATTTTCAAATTCAAGCTTCAACAGAAACTTGGATTTTGATTTTTGTGATGCATCGCAAATGAAGCATGATGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAGCCACATCAGTTGTACAAGACTCGGAACACTCACATTTCTAATAATGCTGGTTCCTTGGAAGACTTTGTCAATGAAATTATGAAACAGAATTGGTTATAG 1728 0.3889 MAVMDEKDHHFPKGMRVLAVDDDRTCLIVLKTLLQKCHYQVTTTNNAITALKLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVDDDPRVMMKGIMHGACFYLVKPVRIEELKNIWQHVIRRNKNDSQEPEKPSNNHENPDSDQSSKANKKRKEQEEEEEEEEEDENDHDNGDDPSAQKKPRVVWSVDLHHKFVTAVEQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRVSNMSNQQHSNIGSAFSSADTSYLRMNPLSGIGQLQTLNNNSGYGLRSFSPSNMLNRFNTPSALNAHGFNSNDTQFQFPSSGLLGRGRSNNNQTYLSGGGLNSVPNLSTIFDSKQSFVRQKPSSPILGVSNNGLILEQNHQGGIYDNIPNSVGSSSQEQISFPSLLDHHHGNSCNNDIWSNECNTLMNSSTFQGGNLSGASSITSLSSQSHDSFTDLNFQGVNFTNNNNSNNVQFQGWNSNNNNNNQNGNYHALSGLIDPFSNSSFNRNLDFDFCDASQMKHDGVIDLTEDSSLKPHQLYKTRNTHISNNAGSLEDFVNEIMKQNWL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3180 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 247 IPR017930 -
Ahy16g3180 575 PIRSF RR_ARR_type-B 1 574 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ahy16g3180 575 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Ahy16g3180 575 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 8 570 - -
Ahy16g3180 575 Coils Coil 154 184 - -
Ahy16g3180 575 Pfam Myb-like DNA-binding domain 193 243 IPR001005 -
Ahy16g3180 575 Gene3D - 187 250 - -
Ahy16g3180 575 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Ahy16g3180 575 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 570 IPR045279 GO:0009736
Ahy16g3180 575 MobiDBLite consensus disorder prediction 168 182 - -
Ahy16g3180 575 CDD REC_typeB_ARR-like 17 131 - -
Ahy16g3180 575 Pfam Response regulator receiver domain 17 125 IPR001789 GO:0000160
Ahy16g3180 575 MobiDBLite consensus disorder prediction 134 167 - -
Ahy16g3180 575 SMART REC_2 15 127 IPR001789 GO:0000160
Ahy16g3180 575 SUPERFAMILY CheY-like 13 136 IPR011006 -
Ahy16g3180 575 MobiDBLite consensus disorder prediction 134 190 - -
Ahy16g3180 575 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Ahy16g3180 575 Gene3D - 14 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3180 Ahy-Chr16 148165598 148168520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3180 11 409 Response Regulator Gene Family AT4G31920 50.611 2.00e-105 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy16g3180 Response_reg 3.60E-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3180 - K14491 adu:110273068 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3180 16 148165598 148168520 Ahy16g3180 16 148165598 148168520 ECH
Ahy16g3180 16 148165598 148168520 Ahy10g1622 10 93799459 93803383 PCT
Ahy10g1622 10 93799459 93803383 Ahy16g3180 16 148165598 148168520 PCT