Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3179 ATGAGTCCTCCAGCTACACCGAACATGGAAGAAGAACCAAAGCCTTCCGTTCCAGCCGTTGATGATGGCGACCAAGCTGAGTCTCGATTCGCCCACTTTTGCAAGAATGGACTAGTATTGGATGAGAAAAGCCTTAAAGAAGCAATGAATCTGCTTGCAGGAACCAAACATCTTTTACAGGCAAATGTTTCATCAATGGGGAATTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTATACTCTATTAAGAAATTGACTCAGAAAAATGAGGCGGGTGGGAAGCAAGAGATGGATAACACTGGGCTTACCTTGTGCGGTATATTGAGAGCAGCAAAGCTCAACATTGCAGATTTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGTAATATATATGGCTCAGATTGGGAGAGCAGGCTTGAGGCAAAGGAGATGCATGCAAATGCCATTCACCTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAGTGGATAATGTTGAAAAGAACTCATCTGTGGCTGTTCAAGCATCTGACTACCATCGCTTTGGATGGTTACTTTTCTTGGCACTTCGTGTACATGCTTTTAGCCGTTTTAAAGATTTGGTGACTTGCACCAATGGTTTGATTTCTATCCTGGCAATCTTGATTATTCATGTTCCTGCGCGATTTCGAAATTTCAACATTAATGACTCTTCACGCTTCGTTAAGAAGAGTAACAAAGGTGTGGACCTCCTGGCGTCTCTCTGCAATATTTATAACAATTCAGAAGATGAATTGAAGAAAACCATGGAGAAAACCAATAATTTAATCGCCAATATATTGAAGAAGCAACCTTGCTTGGCATCTCAATGTGAAGCTGAAAACCTGGAGAATTTTGATAGAGATGGGTTGACCTATTTTAGAGATTTGATGGAGGAGTCATCTCTTCCTTCCAGTTTAAATATCTTGGAGAAAGATTATGATGACATGATTCGCAACAAGGGTGAATTAGATGAAAGGCTGTTCATCAATGAAGATGACAGCTTGTTAGCTTCTGGAAGTTTGTCTGGGGGTTCTGTTTCTGCAAGTGGTGTAAAGCGGAAATTTGATACAATGGCATCACCCGTAAAGACTATTACAAGTCCACTCTCGCCCCACCGCTCCCCCTCATCTCATGCTAATGGCATTCCAGGCAGTGTAAATTCAAAGATGGCAGCGACTCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGTAGTCTCATATCACCACTTGCATCAAAGCCATCACAAGAGCTTGAGCGTTTCTTGACATCATGTGACAGGGATGTCACAGGTGATGTGGTGCGCAGGGCACAGATCATATTGCAGGCAATATTTCCCAGCAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCGAGCCTGATGGACAATATTTGGGCAGAGCAACGTAGATTGGAGGCCTTGAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAATCCCAAATACTACATGCAACTAATTTAACATCACTACTAACTAATGAGAGGTTCCATCGGTGTATGCTTGCCTGTTCTGCGGAACTTGTTCTGGCAACTCATAAGACTGTAACAATGCTGTTCCCTGCAGTATTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATCGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTAAGACGACATTTGAATTCCTTGGAAGAACGACTCTTGGAGAGTATGGTATGGGAAAAGGGTTCATCGATGTATAACTCTTTAGCTGTCGCTAAACCTTCACTTGCTGCGGAAATAAATCGTCTCGGACTATCAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAATTTCTCTTGTGGAGGTTTGCCTCCTGTGCCTTCCTTGCCTAAGTTCGAGACGTCACCAACTCAGAATGGGGATACAATGTCACCAAAACGACTCTGTACAGAGTATCGAAATTCTTTTGCTTCACCAGTGAAAGATCGCCTTCTTCCCTTCAGCAATCTTAAATCAAAGCTACCCCCACCTCCTCTACAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGGATTAATATATTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGTTACAGTTATCACAACAGATAAGGGAGAATGTATACTGTCTTTTCCAGCAAATCCTTAATCAACGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTTTATGGAGTTGCTAAGATTTCTCAACTGAATCTAACTTTCAAGGAGATCATATACAACTATAGAAAGCAACCACAGTGCAAACCACAAGTCTTTCGCAATGTATTTGTGGATTGGTCATTGACACGCCGAAATGGGAGAAGAGGACAGGAGCATGTGGATATCATTGCATTCTACAATGAAGTATTCATTCCCACTGTGAAACCACTTCTAGTAGAACTTGGGCCTGCAGAAATCACTACAAAAAACAGCCGGATGCCTGAAGTGAATGTTAAAAATGATGCTCAATGTCCTGGATCTCCTAAAATATCATCTTTCCCAAGTCTTCCAGATATGTCACCAAAAAAGGTGTCTGCCACACGCAATGTATATGTCTCTCCACTACGATCATCCAAGATGGATGCTCTAATATCACATAACTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATAATCGTTTGAATGGCAACCGGAAGGTCAGAGGTTCGCTCAATTTTGATGACATGGATGTCGGCTTGGTTAGCGACTCAATGGTTGCGAACAGCCTCTATCTGCAAAATGGAAGTTGTGCATCGTCGTCGGGTGCACCCATGAAGTCCGAGCAACCTGACTCTTAA 3039 0.4228 MSPPATPNMEEEPKPSVPAVDDGDQAESRFAHFCKNGLVLDEKSLKEAMNLLAGTKHLLQANVSSMGNSEEAERYWFAFILYSIKKLTQKNEAGGKQEMDNTGLTLCGILRAAKLNIADFFKELPQFVVKAGPILSNIYGSDWESRLEAKEMHANAIHLKILSKYYKRVFGEFFVAVDNVEKNSSVAVQASDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSNKGVDLLASLCNIYNNSEDELKKTMEKTNNLIANILKKQPCLASQCEAENLENFDRDGLTYFRDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDSLLASGSLSGGSVSASGVKRKFDTMASPVKTITSPLSPHRSPSSHANGIPGSVNSKMAATPVSTAMTTAKWLRSLISPLASKPSQELERFLTSCDRDVTGDVVRRAQIILQAIFPSSPLGERCVTGSLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVAKPSLAAEINRLGLSAEPMPSLDEIAMHINFSCGGLPPVPSLPKFETSPTQNGDTMSPKRLCTEYRNSFASPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIIYNYRKQPQCKPQVFRNVFVDWSLTRRNGRRGQEHVDIIAFYNEVFIPTVKPLLVELGPAEITTKNSRMPEVNVKNDAQCPGSPKISSFPSLPDMSPKKVSATRNVYVSPLRSSKMDALISHNSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGSLNFDDMDVGLVSDSMVANSLYLQNGSCASSSGAPMKSEQPDS* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3179 1012 Gene3D - 417 605 - -
Ahy16g3179 1012 SMART DUF3452_2 87 232 IPR024599 -
Ahy16g3179 1012 MobiDBLite consensus disorder prediction 887 907 - -
Ahy16g3179 1012 Gene3D - 688 884 - -
Ahy16g3179 1012 Coils Coil 327 347 - -
Ahy16g3179 1012 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 9 999 IPR028309 GO:0006357|GO:0051726
Ahy16g3179 1012 PANTHER BNACNNG22930D PROTEIN 9 999 - -
Ahy16g3179 1012 SMART RB_A_2 414 615 IPR002720 GO:0005634|GO:0051726
Ahy16g3179 1012 Gene3D - 193 351 - -
Ahy16g3179 1012 Coils Coil 266 290 - -
Ahy16g3179 1012 Pfam Retinoblastoma-associated protein A domain 414 615 IPR002720 GO:0005634|GO:0051726
Ahy16g3179 1012 MobiDBLite consensus disorder prediction 386 409 - -
Ahy16g3179 1012 MobiDBLite consensus disorder prediction 1 22 - -
Ahy16g3179 1012 Pfam Retinoblastoma-associated protein B domain 733 860 IPR002719 GO:0005634|GO:0051726
Ahy16g3179 1012 Pfam Domain of unknown function (DUF3452) 97 232 IPR024599 -
Ahy16g3179 1012 SUPERFAMILY Cyclin-like 731 900 IPR036915 -
Ahy16g3179 1012 SUPERFAMILY Cyclin-like 422 617 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3179 Ahy-Chr16 148148346 148156073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3179 9 1012 Core Cell Cycle Gene Families AT3G12280 68.915 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Ahy16g3179 RB_A 1.20E-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3179 K04681 - gmx:100779266 1712.97