Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3177 ATGGAAACACTACTTCCTACCAACAAGAAACACTTCTTCTCTACTCCTCCAACTCCATGTACACCACAACACAAGAATCAACAATCTTTGCAAGACGAAGAAGCAGAAGAAAACGATACAAACATAGGTAATAACAATAATGCTTTGTTATTATTGGATTTGAATGTCTCCGGCAACCAAGACGATCTGGACGACGGATCGCCCGAGCTCAACCTCATAACTTGTTTGGATATGGATTCATTATCCAATAACAAAAATAATTCTCCATCAGAAGAAGAACCGTCATTATTACCAGACAAACCGAATTGCTTTGGTGACGGTTCATCTTCTTCCGACGTAGAAATGAGGGTTTTTTCTTGCAATTATTGCCAGAGAAAATTTTACAGTTCGCAAGCACTTGGCGGACACCAAAACGCTCACAAAAGGGAGCGATCGATAGCCAAGAGAGGCCACAGATTCGGGACGCAAATACTGTCCTCTACACCTGCCTTTGGAATGATTCCACTTCGCTATGCTGCCTCCGCCGCCAGCATAGCGTCTCTGCCGCTCCACGGCGGCGCGTGTGGCAACAGAGGACTCGGAATTCAAGCTCATGCAATGATCCACAAACCTTCACACAATGGACACCATCACGGTTGGTCAAGACCCCTTATTGATCCACAACCCGGTGTTGCAAGACTGGCTATGGCGGATTTTCATCGAACTTCGGCATTATCGGCGTCAAGAGGAAGCGTCGGAAGATTTGAAGTGATGAATTCAGCATCGCCAAATAAAGAAATCAGTGGGTTTTTTCTTAGTAGTGGAACTCATCGTCATCATCAAGATGAAATCAAGCACCTTGATTTGTCTCTCAAGCTTTAA 861 0.446 METLLPTNKKHFFSTPPTPCTPQHKNQQSLQDEEAEENDTNIGNNNNALLLLDLNVSGNQDDLDDGSPELNLITCLDMDSLSNNKNNSPSEEEPSLLPDKPNCFGDGSSSSDVEMRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQILSSTPAFGMIPLRYAASAASIASLPLHGGACGNRGLGIQAHAMIHKPSHNGHHHGWSRPLIDPQPGVARLAMADFHRTSALSASRGSVGRFEVMNSASPNKEISGFFLSSGTHRHHQDEIKHLDLSLKL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3177 286 Gene3D Classic Zinc Finger 106 163 - -
Ahy16g3177 286 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 286 - -
Ahy16g3177 286 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 286 IPR044246 GO:0009788
Ahy16g3177 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Ahy16g3177 286 MobiDBLite consensus disorder prediction 1 44 - -
Ahy16g3177 286 MobiDBLite consensus disorder prediction 1 28 - -
Ahy16g3177 286 SUPERFAMILY beta-beta-alpha zinc fingers 116 145 IPR036236 -
Ahy16g3177 286 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3177 Ahy-Chr16 148121718 148123078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3177 35 286 C2H2 Transcription Factor Family AT5G10970 35.688 2.76e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g3177 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3177 16 148121718 148123078 Ahy6g2482 6 109652296 109653535 hybridization
Ahy16g3177 16 148121718 148123078 Ahy20g2063 20 116399453 116400640 PCT
Ahy16g3177 16 148121718 148123078 Ahy10g1620 10 93606529 93607705 PCT
Ahy20g2063 20 116399453 116400640 Ahy16g3177 16 148121718 148123078 PCT
Ahy10g1620 10 93606529 93607705 Ahy16g3177 16 148121718 148123078 PCT