Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3173 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCCATTTTGAAGACAAGGATATGGCTTGGAACATTTGAAACAGCAGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACCAATTTCCCTTTCAATCCTAACACTACCAACAACAATGTCTCTCAATCTTCTTCTTCAAAGCTTCTCTCACCAACTTTGACCGCAAAATTGCACAGATGCTACATGGCTTCTTTGCAATTAACTCGGCAACAAGATCCTCAAAGGGTAAATGATAATCATAATAATAGTAACTACTCCAAAGAACAAGTTAGTGAAAAGGGTGATTCAATTGTGTCATCAAAAAAGAGAACACATGATGAGGAGGAAGAGGTGAAACAAGATTCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACAGTTCAAGCCACTTGAAGAACATCACATTGACCAAATGATTGAGGAGCTTCTTCATTATGGCTCTATTGAACTTTGTTCTGTTTTTCCACACCAAGATATTTAA 603 0.4063 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNTTNNNVSQSSSSKLLSPTLTAKLHRCYMASLQLTRQQDPQRVNDNHNNSNYSKEQVSEKGDSIVSSKKRTHDEEEEVKQDSEANWVVKKVKGMDQIGPQFKPLEEHHIDQMIEELLHYGSIELCSVFPHQDI* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3173 200 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Ahy16g3173 200 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Ahy16g3173 200 CDD AP2 6 60 IPR001471 GO:0003700|GO:0006355
Ahy16g3173 200 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Ahy16g3173 200 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Ahy16g3173 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 194 - -
Ahy16g3173 200 MobiDBLite consensus disorder prediction 102 148 - -
Ahy16g3173 200 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Ahy16g3173 200 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Ahy16g3173 200 MobiDBLite consensus disorder prediction 102 127 - -
Ahy16g3173 200 MobiDBLite consensus disorder prediction 128 148 - -
Ahy16g3173 200 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Ahy16g3173 200 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3173 Ahy-Chr16 148054843 148056130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3173 1 200 AP2-EREBP Transcription Factor Family AT5G25190 61.194 9.68e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g3173 AP2 6.60E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3173 - - aip:107605402 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3173 16 148054843 148056130 Ahy6g2475 6 109565184 109566316 hybridization
Ahy16g3173 16 148054843 148056130 Ahy20g2059 20 116176080 116177327 PCT
Ahy16g3173 16 148054843 148056130 Ahy10g1613 10 93305518 93306723 PCT
Ahy20g2059 20 116176080 116177327 Ahy16g3173 16 148054843 148056130 PCT
Ahy10g1613 10 93305518 93306723 Ahy16g3173 16 148054843 148056130 PCT