Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3156 ATGGGGAAGCCAACAGGGAAAAAGAAAGATCATGAAAGTCCCAAGGAAAAAGAAGCTAAGGTTCCTGCTACTAATAAGACTATGGACCGTAGCGCCTCAAAGGTCCTTGATGAAGACACTGCCATGTTCATCAACATGGCACAAGAGCTCAAGGAAGAAGGCAACAGGCTATATCAGAAGAAGGATCATGAAGCTGCCATGTTGAAGTTTGAGAAGGCTTTGAAGCTCCTACCGAAGAATCACATTGATGCTGCACACCTTCACACAAGTATGGCCGTCTGTTACATGCAAATGGGACTAGGGGAGTACCCTCATGCCATCAACGAATGCAATATGGCGTTAGAAGTCTCGCCTAGATATAGCAGGGCTCTGTTGAAGAGGGCAAAGTGCTATGCAGCGTTGAATCGGTTGGATTTGGCAATGAGGGATGTTAGGATTGTTTTGAATTGGGAGCCTAATAACCTTACAGCATTGGAGATCCAGGATAGTCTGAGAATTACAATGGAAGAAAAGGGTATCACTATAGATGAGACTGAGATTGCTTTGGCTACAATCGCAGAGCCTCTAGGTGCCCGGTTGCGAAAAGTGGTGAGGGAGAAGCTAAAGAAGAAGAAAGGTCATCACCAGAAAAGTGACGAGAAGATGGAGGAGGATAAGGAGGTTGTGCACAAGGAGGTGGTGCAAAAGGATCATGTGCAGGAGAATGTGAAGAGTCATGTTAAGGATAAGGATAAGGAAGTGGTCAAGAACACAATCGAGAAAGACAATTTGGAAGCAAGACCTGTTAAGCGGCGAGAAAAGCCGGTTACAAGGACAGTGAAGTTCATATTTGGAGAGGATATAAGATGGGCGCAGCTGCCGGTGAATTGTAGTTTGAGGATGATAAGGGATACAATAAAGGATCGGTTTCCACAATTGAAGGGTGTTCTTGTGAAGTATAAGGATGGAGAAGGTGATTTTGTTACAATAACCAATGTTGCTGATTTAAGGCTAGCTGAAAGTTCCGGTAATGTGCTGGGATCAATTCGACTTTATATTACAGAAGTGGATCCTTCACAGGAACCATCTTATGATGATAAAACCATGGTGAGTGGGGTGCCAACTTATGTTAGCAAATCAGGTGAGGATATAGAGAATGTAGCTAGGCAAAGAGCCGAACCGGTAGCAAACCGGGTGATTACTGTGGAGGACTGGCTTGTCCAGTTTGCAAGGCTGTTCAAGAACCATGTTGGGTTTGACTCTGATGCATATCTAGATATTCACGAGGTTGGAATGAAGCTATATTCCGAAGCAATGGAGGATACTGCATCGGATGATGATGCTCAAGAACTGTTTGAAATTGCAGCAGATAAATTTCAAGAAATGGCAGCTTTGGCATTGTTTAATTGGGGGAATGTTCACATGTCTAGGGCGAGGAAGCGTGTATCCTCTGCAGAGGATGGATCAAGAGAGTCTTTGGAGAGTATCAAGTCTGCATATGACTGGGCTCAAAATGAGTACACAAAAGCAGAAACGAGATACGAAGAGGCTGTGAGAATCAAACCCGACTTCTATGAAGGACTTCTTGCACTCGGGTATCAGCAGTTTGAGCAAGCAAAGCTTCATTGGTGTTATTCGGTGGCAACCAATAAGGACCTGGACATTGGTGCTTCTGAAGAGGTTTTGCAGTACTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATGTTGATGTGGGAAGAGATTGAGGAGCAGCGTTTGAATGGATTATCCAAATTCAACAAACATAAAGAACAGTTAGAGAAAATGGATTTGCATAATCTTTTCCGGGATGTTTCTCCGGAGGAAGCCGAAGAGCAGGCTTCAAAGATGAGGTTACAGGTATATCTTTTATGGGGAACGTTGTTGTATGAGCGCTCTGTTGTGGAATATAAGCTAGGCCTACCCACATGGGAGGAATGCTTGGAGGTTGCTGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCGACCGACATAGGTGTCATGATAAAGAATCATAGTTCTAATACATCAGCACTTGGAGGTATGTAA 2049 0.4397 MGKPTGKKKDHESPKEKEAKVPATNKTMDRSASKVLDEDTAMFINMAQELKEEGNRLYQKKDHEAAMLKFEKALKLLPKNHIDAAHLHTSMAVCYMQMGLGEYPHAINECNMALEVSPRYSRALLKRAKCYAALNRLDLAMRDVRIVLNWEPNNLTALEIQDSLRITMEEKGITIDETEIALATIAEPLGARLRKVVREKLKKKKGHHQKSDEKMEEDKEVVHKEVVQKDHVQENVKSHVKDKDKEVVKNTIEKDNLEARPVKRREKPVTRTVKFIFGEDIRWAQLPVNCSLRMIRDTIKDRFPQLKGVLVKYKDGEGDFVTITNVADLRLAESSGNVLGSIRLYITEVDPSQEPSYDDKTMVSGVPTYVSKSGEDIENVARQRAEPVANRVITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTASDDDAQELFEIAADKFQEMAALALFNWGNVHMSRARKRVSSAEDGSRESLESIKSAYDWAQNEYTKAETRYEEAVRIKPDFYEGLLALGYQQFEQAKLHWCYSVATNKDLDIGASEEVLQYYNKAEDSMEKGMLMWEEIEEQRLNGLSKFNKHKEQLEKMDLHNLFRDVSPEEAEEQASKMRLQVYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSTDIGVMIKNHSSNTSALGGM* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3156 682 CDD PB1 272 347 - -
Ahy16g3156 682 ProSiteProfiles PB1 domain profile. 270 349 IPR000270 GO:0005515
Ahy16g3156 682 SMART tpr_5 121 154 IPR019734 GO:0005515
Ahy16g3156 682 SMART tpr_5 85 120 IPR019734 GO:0005515
Ahy16g3156 682 SMART tpr_5 47 80 IPR019734 GO:0005515
Ahy16g3156 682 Pfam PB1 domain 270 347 IPR000270 GO:0005515
Ahy16g3156 682 MobiDBLite consensus disorder prediction 1 24 - -
Ahy16g3156 682 SUPERFAMILY TPR-like 46 534 IPR011990 GO:0005515
Ahy16g3156 682 SUPERFAMILY CAD & PB1 domains 268 357 - -
Ahy16g3156 682 Gene3D Tetratricopeptide repeat domain 44 173 IPR011990 GO:0005515
Ahy16g3156 682 PANTHER PROTEIN CLMP1 1 682 IPR044517 -
Ahy16g3156 682 MobiDBLite consensus disorder prediction 1 32 - -
Ahy16g3156 682 PANTHER PROTEIN PHOX4 1 682 - -
Ahy16g3156 682 Gene3D Tetratricopeptide repeat domain 403 656 IPR011990 GO:0005515
Ahy16g3156 682 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Ahy16g3156 682 SMART PB1_new 270 349 IPR000270 GO:0005515
Ahy16g3156 682 Gene3D - 270 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3156 Ahy-Chr16 147778727 147780805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3156 37 170 Calmodulin-binding Proteins AT3G25230 29.371 1.82e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3156 - - vra:106765155 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3156 16 147778727 147780805 Ahy16g3156 16 147778727 147780805 ECH