LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g3127	ATGGCAAAAAATTGGTCTCAATTCAATGTTAATATGGATACCTTCTTCTGTTTGGGTATCCTTCTACAGTGTGAGATTGTGTTTACTAGTATTCAAAGGGTAGGAAAGGTATTTCCAGGTCTAGAAGGTTCTCAAATGAATTGGGTAGATAGGGATGGAAAGTTTCTTGTTTCCAACAATAAAGAATTCACCTTTGGGTTTGATCGAACCCAAAATGATACCACATTGTTTCTATTAGCAGTGGTCCACACTGCTAGTTCCATGGTTGTTTGGTCCGCGAACAGAGCGGTTCCTGTTTCGAATTCTGATAGATTTGTGTTTGATGAGAAGGGTAATGCTTTTTTGCAGAAAGGGGGGAAAATTGTTTGGTCTAGTGACACAGGTGGGAAAGGGGTTTCTTCAATGGAATTGAAGGACACTGGGAATTTGGTTTTGATTGGGAGTAATGATAGTGAAGTGATTTGGCAGAGCTTCGATGATCCGACCGATACATTGCTTCCAATGCAGGAATTCCATAAGGGAATGAAACTTGTTAGTGAGCCTGATTCTAACAACTTTACCTATGTTCTTGAGATTGGAACGTCCGGTGATGTCACTCTTTCGGCCGTGTTACAAACTCTGCAACCAATGCCATATTGGTCTATGCAGAGTGATAGCCGCAGAATCGTCAATAGAGGTGGCAATGAGGTGGCTTCGGCAACCATTGTTGCGAATTCTTGGAGGTTCTATGACAAGAATAAGTCATTGTTGTGGGAATTTGTTTTCAAAGATAATGAGGCTGTGAATGATACTTGGACTGCAGTGTTGGGAAGTGATGGTATTATCACATTCTACAGTCTCCAAAATCAAGGATTGGATGGCGTCGCGCCAAGAAGAATTCCAGAATATTCTTGCAGCACACCGGAGCCTTGTGATCCCTACAATTTATGCACCGGTGACAGAAAGTGCAGCTGTCCTTCTGTTCTAAGCTCTAGGCCTAATTGCAAACCGGGTTTTGCCTCTCCTTGTAACTCGAAAGGTGCAATTGAGCTAGTTAAGGCGGACGATGGACTAAACTACTTTGCGCTCGGGTTCCTTCCACCCTTTTCGAGAACTGATCTGATTGGTTGCAAGACTTCCTGCAGTGAAAATTGTTCATGCCTTGCTATGTTCTTCCAAGAAAGTTCAAGAAGTTGTTTTCTATTGGATTGGATTGGAAGCTTTGAGAAGTCCGATAAGGATACTGGTTTTGTCTCTTACATTAAGGTCTCCAGGGATGGTGGCACTGACAAAGGTGATGGTGGAAATAGTAATAAGCAAACCGTGATTGTTGTGATAATTGTGGTTTTAACATTGCTTGTTATTTCTGGTATGATCTTTCTTGGCCTAAGATACTACAAGAAAAGTGAACATTCAGCCGAGACTCCCCAAGAGAATTCGGATGGTGACACTTTCTTGGAGAACTTAACTGGCATGCCAATTCGCTCTGGCTACAATGATCTTGAAATCGCGACTAATAACTTCTCTGAGAAGCTTGGGCAAGGGGGTTTCGGCTCGGTTTACAAAGGAGTCCTACCAAATGGAACAGAACTAGCTGTGAAAAAGTTGGAAGGAATTGGCCAGGGGAAGAGAGAGTTCAGAGCTGAAGTTAGCATAATTGGTAGCATTCATCATCACCATCTGGTTCGGCTTAAAGGATTTTGCGCCGAAGGAACTCACCGGCTTCTTGCTTATGAGTACATGGCTAATGGCTCCTTGGATAAATGGATATTCAACAAAAACAATGCAGAATTTTCATTGGATTGGGACACAAGGTTCAATATAGCGCTTGGAACTGCGAAAGGACTCGCATACCTTCATGAAGATTGTGACTCAAAGATTGTTCATTGTGATATCAAACCAGAAAATGTGCTTCTAGATGAGAACTTCAATGCCAAAGTTTCAGATTTTGGTCTAGCTAAGCTCATGACGCGCGAACAAAGCCATGTTTTCACAACACTAAGGGGGACTCGAGGGTATCTCGCCCCTGAGTGGATAACAAACTACGCCATATCAGAGAAGAGTGATGTATACAGCTATGGTATGGTTTTGTTAGAGATAATTGGCGGCCGGAAAAACTATGATCCGGCCGAAAGCTCGGAGAAATCCTATTTCCCATATTTTACATTCAAGATGATGGAAGAAGGGAAACTAAGAGACATTGTTGATTCAGAATTGAAAGCATATGAAGATGATGAGAGGGTAGACATTGCAATCAAAGTTGCATTGTGGTGCATACAAGAAGACATGAATCTAAGGCCTTCAATGAGCAAAGTTGTGCAAATGCTTGAAGGTCTTTGCACTGTTCCTAAGCCACCATCAAGATTTTCTCCATTAGGATCTAACATTCACTCAATTCCTTTTTCTATGTCAACTAGTGAGGCTGGAACTTCTTCATCAGCACCATCAGATACTAACACTGAAGCTTTTCTCCGTGGGGTTCAACTTTCAGGGCCAAGATAA	2481	0.4216	MAKNWSQFNVNMDTFFCLGILLQCEIVFTSIQRVGKVFPGLEGSQMNWVDRDGKFLVSNNKEFTFGFDRTQNDTTLFLLAVVHTASSMVVWSANRAVPVSNSDRFVFDEKGNAFLQKGGKIVWSSDTGGKGVSSMELKDTGNLVLIGSNDSEVIWQSFDDPTDTLLPMQEFHKGMKLVSEPDSNNFTYVLEIGTSGDVTLSAVLQTLQPMPYWSMQSDSRRIVNRGGNEVASATIVANSWRFYDKNKSLLWEFVFKDNEAVNDTWTAVLGSDGIITFYSLQNQGLDGVAPRRIPEYSCSTPEPCDPYNLCTGDRKCSCPSVLSSRPNCKPGFASPCNSKGAIELVKADDGLNYFALGFLPPFSRTDLIGCKTSCSENCSCLAMFFQESSRSCFLLDWIGSFEKSDKDTGFVSYIKVSRDGGTDKGDGGNSNKQTVIVVIIVVLTLLVISGMIFLGLRYYKKSEHSAETPQENSDGDTFLENLTGMPIRSGYNDLEIATNNFSEKLGQGGFGSVYKGVLPNGTELAVKKLEGIGQGKREFRAEVSIIGSIHHHHLVRLKGFCAEGTHRLLAYEYMANGSLDKWIFNKNNAEFSLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDENFNAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPAESSEKSYFPYFTFKMMEEGKLRDIVDSELKAYEDDERVDIAIKVALWCIQEDMNLRPSMSKVVQMLEGLCTVPKPPSRFSPLGSNIHSIPFSMSTSEAGTSSSAPSDTNTEAFLRGVQLSGPR*	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g3127	826	Gene3D	Phosphorylase Kinase; domain 1	462	573	-	-
	Ahy16g3127	826	Pfam	D-mannose binding lectin	89	172	IPR001480	-
	Ahy16g3127	826	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5	4	826	-	-
	Ahy16g3127	826	Gene3D	-	49	160	IPR036426	-
	Ahy16g3127	826	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	620	632	IPR008271	GO:0004672\|GO:0006468
	Ahy16g3127	826	SMART	serkin_6	499	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy16g3127	826	MobiDBLite	consensus disorder prediction	796	826	-	-
	Ahy16g3127	826	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	4	826	-	-
	Ahy16g3127	826	ProSitePatterns	Protein kinases ATP-binding region signature.	505	528	IPR017441	GO:0005524
	Ahy16g3127	826	MobiDBLite	consensus disorder prediction	796	818	-	-
	Ahy16g3127	826	Gene3D	Transferase(Phosphotransferase) domain 1	574	777	-	-
	Ahy16g3127	826	ProSiteProfiles	Bulb-type lectin domain profile.	41	158	IPR001480	-
	Ahy16g3127	826	Pfam	Protein kinase domain	502	767	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy16g3127	826	ProSiteProfiles	Protein kinase domain profile.	499	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy16g3127	826	SMART	blect_4	47	161	IPR001480	-
	Ahy16g3127	826	CDD	B_lectin	52	161	IPR001480	-
	Ahy16g3127	826	PIRSF	SRK	10	818	IPR024171	GO:0004674
	Ahy16g3127	826	SUPERFAMILY	alpha-D-mannose-specific plant lectins	88	215	IPR036426	-
	Ahy16g3127	826	SUPERFAMILY	Protein kinase-like (PK-like)	483	770	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g3127	Ahy-Chr16	147356787	147359956	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g3127	446	779	Receptor kinase-like Gene Family	AT5G20050	45.070	2.00e-95	304

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Ahy16g3127		Pkinase	6.80E-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g3127	-		-	adu:107495387	1597.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g3127	16	147356787	147359956	Ahy16g3127	16	147356787	147359956	ECH
	Ahy16g3127	16	147356787	147359956	Ahy18g2693	18	130091278	130095006	ECH
	Ahy16g3127	16	147356787	147359956	Ahy6g2429	6	108793519	108796673	hybridization
	Ahy16g3127	16	147356787	147359956	Ahy18g2693	18	130091278	130095006	PCT
	Ahy16g3127	16	147356787	147359956	Ahy8g2443	8	47130443	47134135	PCT
	Ahy18g2693	18	130091278	130095006	Ahy16g3127	16	147356787	147359956	PCT
	Ahy8g2443	8	47130443	47134135	Ahy16g3127	16	147356787	147359956	PCT