Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3073 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCAGTTGCTATCGATGCTCCCGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCCTCGTATATTGAGACACAATTAATTAAGGCTAGGGAGCAACAGCAGCAGCAACAGCAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAACAGCAGCAGCAGCAGCAACAACACCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCCGCAGCAACAGCAGCAACAACAGCAGCCACAGCCGCAGCAACAGCAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTACCAATGGGCTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGTAGTCAGCAATTACCAGGGTCTACTCCGGACATTAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGCAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACAGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCTAGTGATGATAGTAGAAGACTCAGAATGCTGATGAATAATAGGAACATGGGGTTAAGTAAGGATGGTCTTTCAAATCCGGTGGGGGATGTACCAAATGTTGGATCACCACTTCCAGGTGGTGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTGGCTCAGTTACATCAGCAGCATCAAAATGCCAATCCACAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATAGCATGCATCAACAAGACAGAGTAGCAGGAGCTGGCAGTGTCACTGCGGATGGAAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCTCCAAGTTCAGCGCCATCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGTACCGATGGCACCGGAACTCTTACATCACCCTCAAACCAGTTGGCTGACGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCAGTACGGGCAAGCACAAGCAAGGTCGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAAACTACCCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGGTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCGTTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCGGGGTATTCTCTTCGCACCTTTACTGGACATTCAACATCAGTTATGTCTCTAGATTTTCACCCGAATAAGGATGACCTTATCTGCTCTTGTGATGGTGACGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTTGCAAAGGGTGGGACTGTGCAGATGAGATTTCAACCTCGACTCGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTCGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCGTTAAAGGGACACACAAAGCCGATACATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGAACAGGAACTGAGGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCACCCAACGTATTCTTCGCTGCTCGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGTCAGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTGGTCGCCGCGTTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCGAGTCATGACAAGTATGTCAAGCTCTGGAAATAA 2685 0.4737 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQHHMQMQQLLLQRQAQQQQQQQQQQQQQQPQQQQQQQQPQPQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRMLMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHSMHQQDRVAGAGSVTADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGTEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3073 894 Gene3D - 586 740 IPR015943 GO:0005515
Ahy16g3073 894 MobiDBLite consensus disorder prediction 144 172 - -
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 809 IPR001680 GO:0005515
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Ahy16g3073 894 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 894 - -
Ahy16g3073 894 MobiDBLite consensus disorder prediction 465 525 - -
Ahy16g3073 894 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 894 IPR044716 GO:0003714
Ahy16g3073 894 MobiDBLite consensus disorder prediction 234 267 - -
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Ahy16g3073 894 MobiDBLite consensus disorder prediction 422 458 - -
Ahy16g3073 894 MobiDBLite consensus disorder prediction 87 126 - -
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Ahy16g3073 894 Gene3D - 741 894 IPR015943 GO:0005515
Ahy16g3073 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Ahy16g3073 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Ahy16g3073 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Ahy16g3073 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Ahy16g3073 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Ahy16g3073 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Ahy16g3073 894 MobiDBLite consensus disorder prediction 376 409 - -
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 651 IPR001680 GO:0005515
Ahy16g3073 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
Ahy16g3073 894 Pfam LisH 10 36 IPR006594 GO:0005515
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Ahy16g3073 894 SMART Lish 8 40 IPR006594 GO:0005515
Ahy16g3073 894 CDD WD40 606 894 - -
Ahy16g3073 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Ahy16g3073 894 MobiDBLite consensus disorder prediction 144 188 - -
Ahy16g3073 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ahy16g3073 894 Coils Coil 120 140 - -
Ahy16g3073 894 MobiDBLite consensus disorder prediction 422 541 - -
Ahy16g3073 894 SUPERFAMILY WD40 repeat-like 604 894 IPR036322 GO:0005515
Ahy16g3073 894 Pfam WD domain, G-beta repeat 610 641 IPR001680 GO:0005515
Ahy16g3073 894 Pfam WD domain, G-beta repeat 857 894 IPR001680 GO:0005515
Ahy16g3073 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Ahy16g3073 894 Pfam WD domain, G-beta repeat 649 684 IPR001680 GO:0005515
Ahy16g3073 894 Pfam WD domain, G-beta repeat 773 807 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3073 Ahy-Chr16 146271644 146281552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3073 655 854 Miscellaneous Gene Families AT5G08390 26.570 3.17e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy16g3073 WD40 0.032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3073 - - aip:107605121 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3073 16 146271644 146281552 Ahy16g3073 16 146271644 146281552 ECH
Ahy16g3073 16 146271644 146281552 Ahy6g2392 6 108037743 108046887 hybridization
Ahy16g3073 16 146271644 146281552 Ahy18g2605 18 128384093 128392496 PCT
Ahy16g3073 16 146271644 146281552 Ahy8g2379 8 46270606 46278888 PCT
Ahy18g2605 18 128384093 128392496 Ahy16g3073 16 146271644 146281552 PCT
Ahy8g2379 8 46270606 46278888 Ahy16g3073 16 146271644 146281552 PCT