Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3042 ATGTTCTCTGGCTCCCAGTTCGACGCCACCACCGCCTTCTCCGGCGGCGGTTTCATGGCATCCCAATCCACCAACCTCAATGATTCATCCCCTTCCGCCGCTAAAAGCCGTGAAACTCAGGGTTTGATTCCGGTGACAGTGAAGCAGATAAGTGAAGCTTCGCATTCTGGTGATGAAAAATCGAATTTTGTGATTAACGGTATTGATGTAAACAATGTTACATTGGTTGGAATGATGTTTGAGAAAGCTGAGAGAACCACTGATGTTAATTTTGTTTTGGATGATGGAACTGGACGAATCAAATGCCGAAGATGGGTCAATGAGGCTTTTGACACCAAAGAAATGGAAGAAGTACAGGATGGTATGTATGTTCGTGTTTATGGCCACTTGAAAAGCTTTCAAGGTGTGAAGCAGCTTGTTGTCTTCTCAGTCAGGCCTGTGACAAATTTTGACGAGATCTCATTTCACTTTGTTGATTGCATACATAATCACCTCCACACCAAAGTAAAGGCAGAAGGAATCACTCCTGCAAATCCTTCATCAGGCTCATCTTTGATCACTCCTGTCAAAAATGCATCGAATGGTTCACAGGAACCGTCATCTAATCCAGGGTATGCTCAGTATAGTGTGGATGGACTCAAGGATTGTGATAAATTGGTTATGGACTATCTGCAACAGCATTCAGACATGTCGGATGAACGAGGAATACATGTCAATGAACTATCTCGAGAACTTAAGCTTCCAATGGACAAGATCATGTTGTCTCTAAAGACTCTCGGAGATGATGGTTTAGTGTACTCCACCATAGATGACTACCATTACAAACAAGCTTGA 834 0.4305 MFSGSQFDATTAFSGGGFMASQSTNLNDSSPSAAKSRETQGLIPVTVKQISEASHSGDEKSNFVINGIDVNNVTLVGMMFEKAERTTDVNFVLDDGTGRIKCRRWVNEAFDTKEMEEVQDGMYVRVYGHLKSFQGVKQLVVFSVRPVTNFDEISFHFVDCIHNHLHTKVKAEGITPANPSSGSSLITPVKNASNGSQEPSSNPGYAQYSVDGLKDCDKLVMDYLQQHSDMSDERGIHVNELSRELKLPMDKIMLSLKTLGDDGLVYSTIDDYHYKQA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3042 277 Pfam Replication protein A C terminal 184 271 IPR014892 -
Ahy16g3042 277 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Ahy16g3042 277 Gene3D - 34 168 IPR012340 -
Ahy16g3042 277 MobiDBLite consensus disorder prediction 174 207 - -
Ahy16g3042 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Ahy16g3042 277 MobiDBLite consensus disorder prediction 173 207 - -
Ahy16g3042 277 PANTHER REPLICATION PROTEIN A-RELATED 1 277 IPR040260 -
Ahy16g3042 277 CDD RPA2_DBD_D 72 165 - -
Ahy16g3042 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Ahy16g3042 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy16g3042 277 Gene3D - 207 277 IPR036388 -
Ahy16g3042 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3042 Ahy-Chr16 145846616 145850643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3042 1 275 Core DNA Replication Machinery Family AT2G24490 47.842 1.06e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3042 K10739 - gmx:100802512 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3042 16 145846616 145850643 Ahy16g3042 16 145846616 145850643 ECH