Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3039 ATGACTGCTTTCAACTCCTTCAGATCGTCCAAATTGGTCTCATGGAAATCTACCGGCAGGCTTCAGCAAACCCTAGCGAATTGCGTAGAGCGGAGGGGCAAGGCTTTGCATTCAGGAAAGGGTTCGACAGTGCGATTGTGCCCTGGGTTCGCCGGCGAAGGAAGGTACTTTGATTATAGGAGCAATTTGATTCCGGCATCTATTGATTTTGTTCAGGTGTCGCCTCTCTGTACCACTCTCTGTAAAAATGGTTTCCGTGTTCGAACCGTAGAGCACTTACTTTCTGCATTGGAGGCTGCTGGAGTTGATAATTGCAGAATTGAGATTGAAAATTTGGATGCTGAAGAGCGTGATGTTGAGCAGATTCCTATATTTGATGGATCAGCAAGAGAATGGGTTGAAGCAGTGGATGAAGTTGGTTTAAAGGTGGCAACAACCCGGGATGGCAAACATTGTGAGAAAATGGCAGCACATGTGAATGAACCGGTGTATGTTTGGAGGGATGATTCTTTTGTTTCTGCATTTCCTTCAAACGTGGTTAAGATAAGTTATGGCATCAGCTTTCCACAGGCACCAGCTATAGGCTCCCAGTGGTTTTCTACACCATCTGTGGACAATTTGTTTTATACCAGACAGATCGCTTTGGCAAGAACCTTCTGTATTTATGAGGAGATCGAGCAAATGCGCAATGTTGGACTTATCAAGGGGGGTTCTCTGGAAAATGCCATTGTATGCTGTACCAGTAAAGGTTGGTTGAACCCACCTCTGCGTTTTAATGATGAACCATGCCGCCACAAGGTCTTAGATCTTATTGGTGATCTTTCACTTTTTGCTCAGTTTGGGAATCAAGGACTTCCAGTGGCACACATTGTAGCTTACAAGGGTGGCCATGCTTTGCATGCTGGTTTGGCACGCCAGTTAATGGGTGAGTGA 933 0.4555 MTAFNSFRSSKLVSWKSTGRLQQTLANCVERRGKALHSGKGSTVRLCPGFAGEGRYFDYRSNLIPASIDFVQVSPLCTTLCKNGFRVRTVEHLLSALEAAGVDNCRIEIENLDAEERDVEQIPIFDGSAREWVEAVDEVGLKVATTRDGKHCEKMAAHVNEPVYVWRDDSFVSAFPSNVVKISYGISFPQAPAIGSQWFSTPSVDNLFYTRQIALARTFCIYEEIEQMRNVGLIKGGSLENAIVCCTSKGWLNPPLRFNDEPCRHKVLDLIGDLSLFAQFGNQGLPVAHIVAYKGGHALHAGLARQLMGE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3039 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 308 IPR020568 -
Ahy16g3039 310 Coils Coil 102 122 - -
Ahy16g3039 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 308 IPR004463 GO:0008759|GO:0009245
Ahy16g3039 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 142 IPR020568 -
Ahy16g3039 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 308 IPR004463 GO:0008759|GO:0009245
Ahy16g3039 310 Gene3D lpxc deacetylase, domain 1 20 148 IPR015870 GO:0008759|GO:0009245
Ahy16g3039 310 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 22 308 IPR004463 GO:0008759|GO:0009245
Ahy16g3039 310 Gene3D lpxc deacetylase, domain 2 157 310 IPR011334 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3039 Ahy-Chr16 145787483 145791774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3039 4 307 Carbohydrate Esterase AT1G25054 62.500 3.46e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3039 K02535 - gmx:100814465 499.975