Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2957 ATGGCTGTTGCTGAGAATGCCGGGGCCAAAATCGGTGCTTCAAGTGAAGATTTGGAAAAAAGTGTAGTGTCATCTGACTCAAATGCCCCAAACGAAGAACTGGAGAAACCGAAACCCCGAAATGGTTCTGTTGGAAACGGTGTAGAGACCGATCAGAATCTCAACGGTGTTGATGGCGTTGCAGCCACTGTCTCAGTCCCTAACGGCAATCACAAACCCCAAATGGGTCAGATGCAAAATGGTTTGGACACAAACGGTGGTGGTGTCCAGGGGCAGCAGGTTGTGGCGAACAATGGCGGCGGCGGAGGTGGGTTTAAGATGGGCCATCAGATAGGTAATGGAGTGATGAATGGAGGAGAGGACGGCGAGAGCTTCAAACGCGAAATGAGGGATTTGGCTGAGCTCTTGTCAAAGTTGAACCCTATGGCTGAGGAGTTTGTGCCCTCTTCACTTGCAAAGAATCATGGGTACTTGCCCGGAGCTGGAGGGTTTGGTTTCCCTAACAATTTGCTACTTCCTGCAAATTTTGGCAATGCTAATGGACAGCCTAATAGAAGGAGAAAGAATGGCTACAATAACCAGGGGAAGCAAAGAGCAAATCATAAAATAGAAATGGAGAGACGGGAAGAGATGATTAGGAGGACTGTTTATGTCTCCGATATTGATCAACAAGTAACTGAAGAGCAACTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGTGTATGCGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACGGATGAAGATGGTGCAAGAGCTGCTTTGAACTTGTCTGGCACCATGCTTGGATATTACCCGGTGAGAGTGCTGCCATCTAAAACTGCCATTGCACCTGTTAATCCGTCATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATTGACAAAAAGGTTACTCAAGCTGACGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCGACTCGAATTGCATTTGTCGAGTTCACAATAGCTGAAAGTGCAATTGCTGCTCTGAACTGTAGTGGTGTGATTTTGGGTACGCTGCCGATAAGGGTAAGTCCATCGAAGACACCAGTCCGTTCTCGTGCACCTCGTGGCTCAGTGCATTGA 1200 0.4683 MAVAENAGAKIGASSEDLEKSVVSSDSNAPNEELEKPKPRNGSVGNGVETDQNLNGVDGVAATVSVPNGNHKPQMGQMQNGLDTNGGGVQGQQVVANNGGGGGGFKMGHQIGNGVMNGGEDGESFKREMRDLAELLSKLNPMAEEFVPSSLAKNHGYLPGAGGFGFPNNLLLPANFGNANGQPNRRRKNGYNNQGKQRANHKIEMERREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALNCSGVILGTLPIRVSPSKTPVRSRAPRGSVH* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2957 399 MobiDBLite consensus disorder prediction 178 200 - -
Ahy16g2957 399 MobiDBLite consensus disorder prediction 178 198 - -
Ahy16g2957 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 289 IPR000504 GO:0003723
Ahy16g2957 399 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 398 - -
Ahy16g2957 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 278 IPR000504 GO:0003723
Ahy16g2957 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Ahy16g2957 399 SMART rrm1_1 312 383 IPR000504 GO:0003723
Ahy16g2957 399 SMART rrm1_1 215 285 IPR000504 GO:0003723
Ahy16g2957 399 SUPERFAMILY RNA-binding domain, RBD 300 393 IPR035979 GO:0003676
Ahy16g2957 399 MobiDBLite consensus disorder prediction 1 56 - -
Ahy16g2957 399 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
Ahy16g2957 399 CDD RRM2_CID8_like 307 388 IPR034825 -
Ahy16g2957 399 Gene3D - 295 393 IPR012677 -
Ahy16g2957 399 Gene3D - 177 291 IPR012677 -
Ahy16g2957 399 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 398 - -
Ahy16g2957 399 SUPERFAMILY RNA-binding domain, RBD 203 290 IPR035979 GO:0003676
Ahy16g2957 399 CDD RRM1_CID8_like 212 291 IPR034823 -
Ahy16g2957 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 387 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2957 Ahy-Chr16 144278494 144283926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2957 213 375 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 3.49e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2957 - - aip:107622933 548.51