Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2949 ATGGATTTGGACAGCATTGAGTGTGTGTCATCCTCTGATGGCATGGATGAAGATGAGATCCAACACCATAACCTTCATCCTCATCATCACTCTGAGTTTTCATCTTCGAAGCCTCGCAATGGAGGCGCCAACAACAACAACATCAACAACAACAACAACAACAACAGCAACAACAATGTTATGGGCGCAACGGTGGTTATTCCTCCTGCAACCAGCGTCCATGAGTTGCTTGAATGTCCCGTTTGCACCAATTCAATGTATCCCCCAATTCATCAGTGCCATAATGGGCATACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGGTGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCGCTCGAGTTACCTTGCAAGTACTACTCCCTCGGATGTCCAGAAATATTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTATTGTCGGGGACATTCCTTTCCTTGTTGCACATCTGAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACATGGATGCTCACGGTATTTCATTGTTTTGGACAATACTTCTGTCTCCACTTTGAAGCATTCCAGCTAGGCATGGCCCCGGTTTACATGGCATTCCTTCGTTTCATGGGGGACGAGAATGAGGCTCGGAACTATAGCTATAGCCTTGAGGTCGGGGCAAATGGCAGGAAACTCATTTGGGAGGGTACTCCACGAAGTATCCGGGATAGCCACCGGAAAGTCAGGGATAGCCATGATGGTCTGATCATTCAACGAAATATGGCCTTATTTTTCTCTGGTGGAGATAGGAAGGAACTGAAACTAAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCCGGAGTGTGCATACCAAATCTTTGTAGCTGA 1026 0.4591 MDLDSIECVSSSDGMDEDEIQHHNLHPHHHSEFSSSKPRNGGANNNNINNNNNNNSNNNVMGATVVIPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2949 341 CDD Sina 193 321 - -
Ahy16g2949 341 ProSiteProfiles Zinc finger SIAH-type profile. 132 192 IPR013010 GO:0008270
Ahy16g2949 341 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 333 - -
Ahy16g2949 341 SUPERFAMILY RING/U-box 68 121 - -
Ahy16g2949 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 185 IPR013083 -
Ahy16g2949 341 MobiDBLite consensus disorder prediction 36 60 - -
Ahy16g2949 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 131 IPR013083 -
Ahy16g2949 341 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 186 320 IPR008974 GO:0005515
Ahy16g2949 341 SUPERFAMILY TRAF domain-like 132 324 - -
Ahy16g2949 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 333 - -
Ahy16g2949 341 MobiDBLite consensus disorder prediction 27 60 - -
Ahy16g2949 341 CDD RING-HC_SIAHs 77 115 - -
Ahy16g2949 341 Pfam Seven in absentia protein family 121 320 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ahy16g2949 341 ProSiteProfiles Zinc finger RING-type profile. 79 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2949 Ahy-Chr16 144146400 144150327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2949 53 327 C3H Transcription Factor Family AT2G41980 76.727 7.58e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2949 K04506 - tcc:18605771 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2581 17 121607729 121610170 Ahy16g2949 16 144146400 144150327 ECH
Ahy16g2949 16 144146400 144150327 Ahy16g2949 16 144146400 144150327 ECH